Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1085 ATGAAGTTCAATTTTCGTCCTCGTTTCTCATCTCGCTCCCACCGCTACTACAGACACCAAACTGGTCATCCACAAACCTCGGACTCTTCCGAATGGTTGGGGTTCACAGTGACCTTAGTTCTTGCTGCTGTTTCCGTTACCGCTGGTATTTCCGTGTACTTGTTCAAGACGAAAACGAAAGCTTTGAACTCCAAGCTTCGTAAGCTTGAGGCATCGCTCAAGTCATCCTTAGAGAAATGCGCCTCTGAGAGGCAAGGCCGCATTAGGGCACAACAGTCCTTGAGAAAAGCACTAACACAACCTAAAAGTGAAAACGTAGAGATGAATTACTATCCCATGGCACCTATTGGCACCATCCAATCATGCTTCACTACAAGAAATGGAACGCCAAGGCAACCATTACTTGTACCTCTTGCTAGAGCATCTTTGATTTTCAATACAACTCGTGTACCACCAGCTTCACTTGAGGGTCTTGCAGAATATTCTCATTGCTGGGTGATATATGTATTTCATCTAAATACAGATCTTGAGAAGCTATGGAATCAACCATCTAAGTCAAAGTTCAAGGCAAAGGTGAGGGTTCCAAGATTACAAGGTGGAAGGAAGGGATTGTTTGCCACACGATCCCCACATCGTCCATGCCCCATTGGACTGACAGTTGCTAAGGTGGAAGCTGTCCAGGGAAATATGCTTTTGCTTTCTGGTGTGGACCTGGTTGATGGAACTCCAGTGCTTGATGTCAAGCCTTATCTACCATACTGTGACAGAGTTGTGGACGCAAAAGTGCCTAATTGGTTGATGGAAGATAACTTACTTGCAGTAGCTACTATAAGCTTCTCAGAGGACTTTACTCCAACCCTAGAAACTTGCTGGAGAATGGCGGAAAAGAAATCACTTTATGCATCGGCAGGCGAATTCCAAAGTTTAATAAAGCAGGTTCTTTCATGGGATATTCGGTCAGTTAGTCAGCGTAATAGACCTCATGATGCCATCTCAAAGAAAGACAATGATGAACAGATGGATGAACCTTCTGATATAGACGAGAGCCTAGATGAAGCAGCTTCTGTGCTTGAGAAAGAGCAGAATTCTCTATATTCCAAGGAAGTAACTTATCACCTTATTTTGGAGGGACTGGATGTCTCCTATAGAATTGATGACAATAGTAATGTCATTGTCCAAAAGGTGTCGCCTTTTGCTGGCATAAGCAATGATCTTAATTCTGTAGCTAGCCTGCCAACTTCGCCAACAAGTGTTTCGCGAGGGAATGATTTATTGACCCATGAACCACGCATCTCCATTTCTAATATTGCCAATATGAAGCTTTCCTCCTTTGTGATACGGGCCGAGGTAAAGAAAGTTGAGAAAAACTTGGGATGGTATTATGAGGGATGCAACAACGACAGCTGTGGTACAAAATTGAAGAGTAGGGTTCTAGGAATCAACTGTCATGGGTGTCAAAGACCAGTGTCAGAGATTGTGCTTAAATATAAAGTACACTTTACTGTGGCTGATGATACTGGAACTACATCGGTTGTCCTTTTCGATGGTGTTGCCTCGAGGCTATTGAACACAAGTGTTAAGCTCTTAAAGGACCAATTGATTGCGGAAGGATGCCCGGATTCTTTTCCCGATGAATTCGAGGATTTGGTTTGTCGGACATTTGTAATGAAATTGAGATCGAGTGAATACAATTCAAAGTACAGACCATCAAGCGTTGGTGTCCACGATCTATCTGATGATGCAGACATCATTAGAGAATTCACTCTTTCTGATCCCCAGCTTCAAGTGCTAGCTACTGATCCGGATGCAGACATCCCATTAGTGAAGCTGTGCGTGTTGAATCTATCAGATACTCTGACCTTTGACTTTTCATCTTCAAAATCTACAAAGTTTATCAAGCACGAGATAAATATGTGA 1917 0.4298 MKFNFRPRFSSRSHRYYRHQTGHPQTSDSSEWLGFTVTLVLAAVSVTAGISVYLFKTKTKALNSKLRKLEASLKSSLEKCASERQGRIRAQQSLRKALTQPKSENVEMNYYPMAPIGTIQSCFTTRNGTPRQPLLVPLARASLIFNTTRVPPASLEGLAEYSHCWVIYVFHLNTDLEKLWNQPSKSKFKAKVRVPRLQGGRKGLFATRSPHRPCPIGLTVAKVEAVQGNMLLLSGVDLVDGTPVLDVKPYLPYCDRVVDAKVPNWLMEDNLLAVATISFSEDFTPTLETCWRMAEKKSLYASAGEFQSLIKQVLSWDIRSVSQRNRPHDAISKKDNDEQMDEPSDIDESLDEAASVLEKEQNSLYSKEVTYHLILEGLDVSYRIDDNSNVIVQKVSPFAGISNDLNSVASLPTSPTSVSRGNDLLTHEPRISISNIANMKLSSFVIRAEVKKVEKNLGWYYEGCNNDSCGTKLKSRVLGINCHGCQRPVSEIVLKYKVHFTVADDTGTTSVVLFDGVASRLLNTSVKLLKDQLIAEGCPDSFPDEFEDLVCRTFVMKLRSSEYNSKYRPSSVGVHDLSDDADIIREFTLSDPQLQVLATDPDADIPLVKLCVLNLSDTLTFDFSSSKSTKFIKHEINM 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1085 638 MobiDBLite consensus disorder prediction 326 340 - -
Lele23g1085 638 SUPERFAMILY Nucleic acid-binding proteins 429 566 IPR012340 -
Lele23g1085 638 ProSiteProfiles TsaA-like domain profile. 113 259 IPR023370 -
Lele23g1085 638 FunFam tRNA (Adenine(37)-N6)-methyltransferase isoform A 112 268 - -
Lele23g1085 638 Gene3D - 112 269 IPR036414 -
Lele23g1085 638 Gene3D - 417 583 IPR012340 -
Lele23g1085 638 Coils Coil 59 79 - -
Lele23g1085 638 Pfam Replication factor-A C terminal domain 444 564 IPR013955 -
Lele23g1085 638 CDD RPA1_DBD_C 431 570 IPR013955 -
Lele23g1085 638 SUPERFAMILY YaeB-like 108 330 IPR036413 -
Lele23g1085 638 PANTHER UNCHARACTERIZED 53 397 IPR040372 -
Lele23g1085 638 MobiDBLite consensus disorder prediction 326 348 - -
Lele23g1085 638 Pfam tRNA-methyltransferase O 128 255 IPR023370 -
Lele23g1085 638 TIGRFAM tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 109 260 IPR023370 -
Lele23g1085 638 CDD UPF0066 115 250 IPR023370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1085 Lele-ChrLele23 16386917 16392735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1085 444 568 Core DNA Replication Machinery Family AT5G61000 25.000 5.28e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1085 23 16386917 16392735 Lele23g1085 23 16386917 16392735 ECH
Lele21g0967 21 6749351 6755809 Lele23g1085 23 16386917 16392735 hybridization
Lele22g0973 22 6826576 6833243 Lele23g1085 23 16386917 16392735 hybridization