Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1022 ATGGTGCCACTGACTTCAGAACTTAAGAGAACAGCTGAAACTGCTTGGGCAGGTGCTGCATATTATTTGATGTTATACATGCTTGCCAGTCATATAGTTGGAGCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTCATGCTGGCAGGAGGCATGTACGAAAGGGTGCAAAAAGGATTTCTTGTATTGTGGTAACTGGTTTATGGAAGGTTATAATGACTGGAACAAAACAAGCGATCAAATTCTTAAGGCACATTGCTCTACAGAAGATGATTCGTCTTTTGATTTTGGAATTTTTGAACAAGCATTGTCATCCGGCATTATTTCATCTAAAAAATTTGTGTCCAAATACTGTTACTGTTTATGGTGGGGCCTCCAGAATTTGAGCACACTTGGCCAGGGGCTTCAAACCAGCACTTATCCTGGGGAAACCATCTTTTCAATAGCGCTAGCCATATTTGGTCTCATCCTCTTTGCACTTCTAATTGGTAACATGCAGACATATCTTCAGTCTATTACAATAAGACTTGAGGAAATGAGAGTCAAAAGGCGTGACTCGGAACAGTGGATGCATCATCGTTTGCTCCCATCAGAGCTGAGAGAGCGGGTTAGACGCTATGATCAATATAAGTGGTTAGCGACACGTGGCGTCAATGAAGAAAGTTTGGTTCAGACACTTCCAAAGGATCTTAGAAGAGATATCAAGCGTCACCTTTGTCTGGCTTTAGTGAGAAGGGTTCCACTGTTTGAGAGTATGGATGAGAGGCTGCTTGATGCCATTTGTGAAAGACTGAAACCTTGTTTATTTACTGAGAATACTTACATTGTACGGGAAGGAGATCCAGTTGACGAGATGCTTTTCATCATTCGTGGTCGACTCGAAAGTGTTACTACAGATGGTGGTAGAAGCGGCTTTTTTAACCGTGGTTTCCTTAAAGAGACCGACTTCTGTGGAGAGGAGCTTTTAACCTGGGCACTGGATCCTAAATCTGGTGCTAACCTCCCAACTTCTACTCGTACGGTTAAGGCATTAACCGAGGTCGAGGGTTTCGCCTTGATCGCGGACGAGTTAAAATTCGTCGCCAGTCAGTTTAGGCGCCTTCATAGTAGACAGGTTCAACACACATTTCGGTTCTACTCACAGCAATGGAGGACTTGGGCCGCCTGCTTTATCCAAGCAGCATGGCGGCGATATTCTAAGAGGAAGGCCATGGAGCTTCGTCGGAAGGAAGAACCCGAAGAGTCAGAAGGAAGTCAAAGTAATGCTAGTGGCGGTTCATACAGCATTGGTGCTACCTTCTTAGCTTCAAGGTTTGCCGCCAATGCCCTCCGGGGAATACATCGCAATCGGAATGCTAAGACTGCGATGGAGTTGGTGAAACTACAGAAACCTCCAGAACCTGACTTTACTGCTGAAGATGTAGATTAA 1431 0.4451 MVPLTSELKRTAETAWAGAAYYLMLYMLASHIVGAFWYLLAVERNDSCWQEACTKGCKKDFLYCGNWFMEGYNDWNKTSDQILKAHCSTEDDSSFDFGIFEQALSSGIISSKKFVSKYCYCLWWGLQNLSTLGQGLQTSTYPGETIFSIALAIFGLILFALLIGNMQTYLQSITIRLEEMRVKRRDSEQWMHHRLLPSELRERVRRYDQYKWLATRGVNEESLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKETDFCGEELLTWALDPKSGANLPTSTRTVKALTEVEGFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKAMELRRKEEPEESEGSQSNASGGSYSIGATFLASRFAANALRGIHRNRNAKTAMELVKLQKPPEPDFTAEDVD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1022 476 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 470 - -
Lele23g1022 476 ProSiteProfiles IQ motif profile. 385 414 IPR000048 GO:0005515
Lele23g1022 476 Pfam Cyclic nucleotide-binding domain 270 358 IPR000595 -
Lele23g1022 476 Gene3D - 4 174 - -
Lele23g1022 476 Gene3D Jelly Rolls 247 367 IPR014710 -
Lele23g1022 476 SMART cnmp_10 249 380 IPR000595 -
Lele23g1022 476 Pfam Ion transport protein 10 175 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele23g1022 476 SUPERFAMILY cAMP-binding domain-like 178 366 IPR018490 -
Lele23g1022 476 FunFam Cyclic nucleotide-gated ion channel 1 247 365 - -
Lele23g1022 476 PRINTS EAG/ELK/ERG potassium channel family signature 212 219 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele23g1022 476 PRINTS EAG/ELK/ERG potassium channel family signature 118 135 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele23g1022 476 PRINTS EAG/ELK/ERG potassium channel family signature 144 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele23g1022 476 PRINTS EAG/ELK/ERG potassium channel family signature 28 38 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele23g1022 476 PRINTS EAG/ELK/ERG potassium channel family signature 162 171 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele23g1022 476 ProSiteProfiles cAMP/cGMP binding motif profile. 249 331 IPR000595 -
Lele23g1022 476 SUPERFAMILY Voltage-gated potassium channels 15 212 - -
Lele23g1022 476 CDD CAP_ED 249 380 IPR000595 -
Lele23g1022 476 FunFam Cyclic nucleotide-gated ion channel 1 176 240 - -
Lele23g1022 476 Gene3D Helix hairpin bin 177 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1022 Lele-ChrLele23 15843541 15847156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1022 1 473 Ion Channels AT5G57940 78.631 0.0 778