Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele23g0955 | ATGGGTGGTACCAATAGTCGACACGTTTCTCGCCCTTCTTCTCGCCGAGTCAACCACCCCAACCGCTTCCGTCTTTCCTCTCTTCTTCCCTGCGGTGCCATTTCTTCTGGCGCTACTCATGAGATTGAAGATCATCCAACTGAACTTCTAGTAGACTCTGCTACAGACTTAAATGAGCAAGTTCAGAAAGTTACAGAGGAATCATCTTTATCACATTCGTCAGAAGCTAGAATTAGCAGCTCACGTGCTGAAACTGGAACCTCCTTTGGTAGCACTATTCAATCCTGTGAGAATGCTAATCTTCAAGATTCTTCCAGAAGTGTTGCAACTAGCAATCAGAGGGAGTGCTTGTTTAAAAGAAAGGAGTTAGTTCCTCCTCATGAGGTAAGTACTGATCATAGTCATAATGAATTTTATAGGGATAGCAGCAACACAGCTAGTACTTCCTTTGTAGAACAGCAGTCTTCAGATCCAGTGTCTGTAAATAGTTCTGCTAACAAGGATGAAGTTAACAATATTGATAATTCAGTGGATAGTAGTATCCCCCGAATATCTCATGAGACATTGCAACTAAGGAGTTCATCCCCTCAAGTGTATGAAGACTCCAGTTCTCGTGGAAGTCATGTTGAGAGTCACGGCAGTGCAGCTACAGCTTTCCAGAATTCTGATTCAAATCCAAGTTCTCAAGTTTCAGATATTCCAGTAACTTCTCTGTTGCAAGAAAATGAATCTCATGAAGAAACAATGCCTCCAAGTTTGGGGTTTCTTGTTCCCAACAGGGAAAGAGGACATGTGAATGAGAGCGTGCTTCATGTTGATGTGGTTACTACATCTGTCAATACTTTGTCTCATAGCAACTCTGATGCCATTGATCATAGTACCAGAAGAAGTGGTAGGAGACAATTTTGGGATGCTTTTTCACATCGGAGTTCTAGAAGGTTTCGTATTTCTCCAACCATTGTCTTCTCAGCCGGTGATCCTGATGACCTAGCATCTCAAGACCGATGGCTTCTTGATTTGAGTAGTGGTTTCTCAAATGATGAGGTTGGGGAGGATTTTGAATATCTTGGCAGCAGAATCCGCAGATCTAATGCACGAATGCTGCGCTCAAGATCTCAGATCTGGGAAAGACTTCGTGATGGCCTTAATGAAACTGATCAGTGGACTAATTCTTGTCCACTAGGACTCCACCCTGATGGCAGGTGTTTCTGTGAGCCTTTCTCCTTGACTGAGGAATCTAATACCCGAGCAAGCATGTCCAGGATAGTCATGCTTGCAGAAGCTTTATTTGAGTTTTTAGATGAAATTCATCGCCAACCCACACCATTTTCACTATCTGTGGCCTCTCTCCCAGCGCCGGAATCAGTTGTTGACTCTTTCCCTCTGAAGTGTCACAAAACGGTTGACACAGCTAATGGTGGTAATAATACTGAACAATGTCACATATGCCTGGTAGAGTACGAAGGAGGGGACAAAATCCGTGTTCTGCCTTGCAATCATGAGTTCCACATGGCATGCGTTGACAAGTGGCTTAAGGAAATACATGGTATATGTCCTCTCTGTCGTGGAAATGTTTGTGGAGAAGGGTTCAACGAGTCTTCAGCCTCATCAAACACAGAAGTATCACCAAACTGA | 1635 | 0.4355 | MGGTNSRHVSRPSSRRVNHPNRFRLSSLLPCGAISSGATHEIEDHPTELLVDSATDLNEQVQKVTEESSLSHSSEARISSSRAETGTSFGSTIQSCENANLQDSSRSVATSNQRECLFKRKELVPPHEVSTDHSHNEFYRDSSNTASTSFVEQQSSDPVSVNSSANKDEVNNIDNSVDSSIPRISHETLQLRSSSPQVYEDSSSRGSHVESHGSAATAFQNSDSNPSSQVSDIPVTSLLQENESHEETMPPSLGFLVPNRERGHVNESVLHVDVVTTSVNTLSHSNSDAIDHSTRRSGRRQFWDAFSHRSSRRFRISPTIVFSAGDPDDLASQDRWLLDLSSGFSNDEVGEDFEYLGSRIRRSNARMLRSRSQIWERLRDGLNETDQWTNSCPLGLHPDGRCFCEPFSLTEESNTRASMSRIVMLAEALFEFLDEIHRQPTPFSLSVASLPAPESVVDSFPLKCHKTVDTANGGNNTEQCHICLVEYEGGDKIRVLPCNHEFHMACVDKWLKEIHGICPLCRGNVCGEGFNESSASSNTEVSPN | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele23g0955 | 544 | MobiDBLite | consensus disorder prediction | 125 | 139 | - | - | |
| Lele23g0955 | 544 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 479 | 522 | - | - | |
| Lele23g0955 | 544 | ProSiteProfiles | Zinc finger RING-type profile. | 480 | 522 | IPR001841 | - | |
| Lele23g0955 | 544 | MobiDBLite | consensus disorder prediction | 140 | 232 | - | - | |
| Lele23g0955 | 544 | Pfam | Ring finger domain | 479 | 522 | IPR001841 | - | |
| Lele23g0955 | 544 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Lele23g0955 | 544 | FunFam | Putative RING zinc finger domain superfamily protein | 447 | 527 | - | - | |
| Lele23g0955 | 544 | SUPERFAMILY | RING/U-box | 474 | 525 | - | - | |
| Lele23g0955 | 544 | SMART | ring_2 | 480 | 521 | IPR001841 | - | |
| Lele23g0955 | 544 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 538 | - | - | |
| Lele23g0955 | 544 | MobiDBLite | consensus disorder prediction | 64 | 89 | - | - | |
| Lele23g0955 | 544 | MobiDBLite | consensus disorder prediction | 125 | 232 | - | - | |
| Lele23g0955 | 544 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 444 | 526 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele23g0955 | Lele-ChrLele23 | 15213854 | 15217741 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele23g0955 | 391 | 526 | C3H Transcription Factor Family | AT5G45290 | 52.318 | 4.04e-41 | 154 |