Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0954 ATGCGTGTGCAGGACGCGGAGCAAGTTGGTGAAGAAGAAGTGGAGACCCATGAGAGCAGAAGGGGGACGTGGCGTTTACATTGTGATTTCTTGCGTGCCCAGATGGAGAACTGGGAAAAGGAGCCTCCTTTGACAACTTCCAGTGTTGGAAATTCGTTCCCTCTGGAAAGCATAGGTGAGGATACAGTGATTGGGGACAAAAAACAGACATTGATGAAATTCGTCCCTGTTCTTCGGTCCGGCAAGTGGTCAGATATTGGAGAGCGTCCTTATATGGAGGACACTCACATATGTATTGGAGACATGGCCAAGGAATTAGGGTATAAAGTTATCAGTGAGGAAGCAGTTTCCTTATATGGAGTATTTGATGGACATGGTGGTGAGAGTGCTGCAAAATTTGTGCGCGATTATCTGCCAGGAGTGATTGTAGAAGATGCTGACTTTCCCTTGGAGATGGAGAAGGTAGTGACAAGTTCATTCTTGGAGACTGATGCTGCATTAAAGTCTCGTTCACTTGAGTCTTCCATGTCTTCTGGTACAACTGCACTAACCGCCATTATACATGGCCAGTCTTTGCTTGTAGCCAACGCTGGGGACTGCAGGGCGGTGTTGTCCCGATGTGGAGGGGCTATAGAAATGTCCATAGATCACAGACCCATATGTACCAAAGAAAGGAAGAGGATTGAATCCTTAGGTGGATTTGTTGATGATGGTTACCTGAATGGCCAACTTGGTGTCACGCGCGCTCTAGGCGACTGGCACCTCAAAGGAATGAAGGAAATGAGTGAAAGAGGACAACAAGGAGGTCCACTAAGTGCAGAGCCAGAACTTAAATTGATGACATTGACCAAAGAAGATGAGTTCTTGATAATTGGGAGTGATGGAATCTGGGATGTGTTCACAAGCCAAAATGCGATCGATTTCACTAGGAGGCGGCTTCGAAAGCACAACGATGTGAAACTTTGCTGCAAGGAAATGGTAGAGGAAGCCATAAAGAGAGGATCAACAGATAACTTAACTGTCGTGATGGTCTGTTTCCACTCAGATCCGCCGCCACCCATGGTGGTTGAAAGGTTAAGAGTCAGGAGAAGCATTTCAGCTGAGGGACTTCAGAATCTAAGATCTCTGTTAGAATCATAG 1140 0.464 MRVQDAEQVGEEEVETHESRRGTWRLHCDFLRAQMENWEKEPPLTTSSVGNSFPLESIGEDTVIGDKKQTLMKFVPVLRSGKWSDIGERPYMEDTHICIGDMAKELGYKVISEEAVSLYGVFDGHGGESAAKFVRDYLPGVIVEDADFPLEMEKVVTSSFLETDAALKSRSLESSMSSGTTALTAIIHGQSLLVANAGDCRAVLSRCGGAIEMSIDHRPICTKERKRIESLGGFVDDGYLNGQLGVTRALGDWHLKGMKEMSERGQQGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFTRRRLRKHNDVKLCCKEMVEEAIKRGSTDNLTVVMVCFHSDPPPPMVVERLRVRRSISAEGLQNLRSLLES 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0954 379 FunFam Probable protein phosphatase 2C 22 64 349 - -
Lele23g0954 379 SUPERFAMILY PP2C-like 70 347 IPR036457 -
Lele23g0954 379 Gene3D - 66 349 IPR036457 -
Lele23g0954 379 Pfam Protein phosphatase 2C 91 338 IPR001932 -
Lele23g0954 379 CDD PP2Cc 79 346 IPR001932 -
Lele23g0954 379 SMART PP2C_4 69 344 IPR001932 -
Lele23g0954 379 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Lele23g0954 379 ProSiteProfiles PPM-type phosphatase domain profile. 79 346 IPR001932 -
Lele23g0954 379 PANTHER PROTEIN PHOSPHATASE 2C 73 344 IPR015655 GO:0004722|GO:0006470
Lele23g0954 379 SMART PP2C_SIG_2 94 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0954 Lele-ChrLele23 15206804 15210472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0954 73 378 PP2C-type Phosphatase Gene Family AT2G25620 58.958 5.41e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lele23g0954 PP2C 2.5e-67 CL0238