Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0953 ATGGCGGAACAAACTGAGAAGGCTTTTCTGAAGCAGCCAAAAGTTTTTCTAAGCTCGAAGAAATCTGGGAAGGGAAAGAGGCCCGGAAAGGGAGGGAATCGTTTTTGGAAGTCTATTGGACTTGGATTCAAGACTCCCAGAGAAGCTATAGAAGTCTTCATACCTGACACTGCTGAAATTAGCTTGTACCATCCTTATGTTGCATCGAATGTCCTGGTTTGCTTGTTACCAGGAACCTACGTTGATAAGAAATGTCCCTTCACTGGCACTGTTTCTATTAGGGGTCGTATCCTAGCTGGCACTTGTCATAGTGCTAAGATGACTAGGACTATTATTGTTAGAAGGAACTATCTTCATTTTGTCAAGAAGTACCAGAGATATGAGAAGAGGCACTCAAACATTGCTGCTCACATATCACCTTGCTTTCGTGTAAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAACGTGTTAAAAGTGATCCCAGCTGGATCTTCTGGTGTTGTGAAGAAAGCATTTACTGGAGTGTGA 558 0.4301 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEVFIPDTAEISLYHPYVASNVLVCLLPGTYVDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGVVKKAFTGV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0953 185 Pfam Ribosomal_S17 N-terminal 4 51 IPR032440 -
Lele23g0953 185 Pfam Ribosomal_S17 N-terminal 78 98 IPR032440 -
Lele23g0953 185 FunFam 40S ribosomal protein S11 71 184 - -
Lele23g0953 185 Gene3D - 75 184 - -
Lele23g0953 185 Gene3D - 1 59 - -
Lele23g0953 185 ProSitePatterns Ribosomal protein S17 signature. 147 159 IPR019979 GO:0003735|GO:0005840|GO:0006412
Lele23g0953 185 PRINTS Ribosomal protein S17 family signature 157 164 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele23g0953 185 PRINTS Ribosomal protein S17 family signature 114 137 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele23g0953 185 PRINTS Ribosomal protein S17 family signature 147 157 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele23g0953 185 SUPERFAMILY Nucleic acid-binding proteins 94 173 IPR012340 -
Lele23g0953 185 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 175 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele23g0953 185 Pfam Ribosomal protein S17 100 168 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele23g0953 185 TIGRFAM uS17_arch: ribosomal protein uS17 82 169 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0953 Lele-ChrLele23 15200085 15201678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0953 1 185 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 78.919 2.84e-92 264