Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0940 ATGGGGAGAGTTCGTACGAAAACGGTGAAGAAGTCGTCTCGACAAGTCATCGAGAAGTACTATTCTCGAATGACGTTGGATTTCCACACTAACAAGAAGATTCTTGAGGAGGTGGCTCTCATCCCTTCCAAGAGGCTCCGTAACAAGATCGCCGGCTTCTCTACGCATCTCATGAAGAGGATCCAGAAGGGTCCTGTTCGCGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAGCGTCGTATGGATTTTGTTCCTGATGTTTCCGCCATTAAGACTGATCAAATTGAAGTTGACAAGGAGACGCTTGATATGCTTAATGCTCTTGGCATGAATGATATTCCCGGTATTGTCCAGGTCGATCCCACTCCTGTGCCGCAGGTCGGATTTGGTCGCGGCGGTTTCGGAGGCGGTGCTAGGAGGGAACCGATTGGTTCAAAAGAAATGGTAGGAGTATTTGACTTTTCTCTGAATGTACCCCTCTGTTCATTTGGCTCCGTCTTCTCCTTGGTTTATAATTGGGTGGTTGCTAAAATGTTACATTGGCTCAATGATTTTGATGGAGTGGGAGAGAATACTACTGGACTTAGACTTGCTGATTCTGGAATATATTCATCTTTTGCCTTTGTGCATACTTGA 639 0.4695 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLNALGMNDIPGIVQVDPTPVPQVGFGRGGFGGGARREPIGSKEMVGVFDFSLNVPLCSFGSVFSLVYNWVVAKMLHWLNDFDGVGENTTGLRLADSGIYSSFAFVHT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0940 212 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele23g0940 212 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele23g0940 212 PANTHER 40S RIBOSOMAL PROTEIN S17 1 124 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele23g0940 212 FunFam 40S ribosomal protein S17 1 62 - -
Lele23g0940 212 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Lele23g0940 212 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele23g0940 212 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0940 Lele-ChrLele23 15068912 15070424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0940 1 133 Cytoplasmic Ribosomal Protein Gene Family AT2G04390 83.942 3.59e-78 229