LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g0925	ATGGATCAAAAGACCACCTTTGACTCCGACATTGTTCTCCTAGAATCAATCCGGAGCTACCTGCTTGATGACGAATCCGATGCTCTCATTGCTTTTCCGGCCACATTCGCCGGAGACGCTCCGGTATGCCTACAGAGTTCTAGCTCCGGGATGACGGAGAACAGCGACGGTGAGATTAGTTCTCCATCTTTCTCGTCCGAACAAACAGCAAACACTTCCACGGTGGCGGAGGTTTGCAGTGGTGTAGATGCGGCTGTGCGTGGAGTTCACGCTCCGTCGAGTGGGAGAGGCTACAGGGGAGTAAGGCGGAGGCCGTGGGGGAAATACGCTGCGGAGATTAGAGATCCGAAGAAGAACGGCGCGAGAGTGTGGCTTGGGACTTATGAGACGGCTGAGGATGCCGCTTTGGCTTATGATCAAGCCGCTTTCAAAATGCGCGGTTCCAAAGCCAAGCTGAATTTTCCCCATCTTATTGGCTCAAATATGACGGAGCCACCAAGAGTGACCGGAAAGCGGCGGTTGCAGGAGCCTTGTGAGGAGGAGGCATTGACGGAGGTAAAGAAGAGAGAGAAGAGCCGAGTGAACATGTTCATGTGGGGTACATGTGAGCTAAACAATGAATGGAAGCCAAGCTGTGGAGTAGCCGACGGCTTCTGTAGAGTTTTAGGAAAAAAATAA	678	0.5236	MDQKTTFDSDIVLLESIRSYLLDDESDALIAFPATFAGDAPVCLQSSSSGMTENSDGEISSPSFSSEQTANTSTVAEVCSGVDAAVRGVHAPSSGRGYRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETAEDAALAYDQAAFKMRGSKAKLNFPHLIGSNMTEPPRVTGKRRLQEPCEEEALTEVKKREKSRVNMFMWGTCELNNEWKPSCGVADGFCRVLGKK	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g0925	225	Pfam	AP2 domain	97	147	IPR001471	GO:0003700\|GO:0006355
	Lele23g0925	225	ProSiteProfiles	AP2/ERF domain profile.	97	155	IPR001471	GO:0003700\|GO:0006355
	Lele23g0925	225	SMART	rav1_2	97	161	IPR001471	GO:0003700\|GO:0006355
	Lele23g0925	225	SUPERFAMILY	DNA-binding domain	97	156	IPR016177	GO:0003677
	Lele23g0925	225	Gene3D	AP2/ERF domain	97	156	IPR036955	GO:0003700\|GO:0006355
	Lele23g0925	225	FunFam	Ethylene-responsive transcription factor 2	96	156	-	-
	Lele23g0925	225	PRINTS	Ethylene responsive element binding protein signature	121	137	IPR001471	GO:0003700\|GO:0006355
	Lele23g0925	225	PRINTS	Ethylene responsive element binding protein signature	98	109	IPR001471	GO:0003700\|GO:0006355
	Lele23g0925	225	CDD	AP2	105	157	IPR001471	GO:0003700\|GO:0006355
	Lele23g0925	225	PANTHER	DNA-BINDING DOMAIN	68	176	IPR044808	GO:0003700\|GO:0009873
	Lele23g0925	225	MobiDBLite	consensus disorder prediction	47	66	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g0925	Lele-ChrLele23	14695304	14695981	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g0925	88	190	AP2-EREBP Transcription Factor Family	AT2G44840	71.154	5.41e-47	153

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele23g0925		AP2	9.6e-16	CL0081