Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0903 ATGGACGAGGATTTGCTTAAGCAAAACACCGATTGCGTCTATTTCTTGGCTTCACCTCTCACTTGCAAAAAGGGGGCTGATTGTGAGTATCGGCATAATGAAATTGCAAGGCTAAACCCAAGAGATTGCTGGTACTGGATATCTGGGAAGTGCCTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGAAGGACATACTGGAGTGCCATCTGAGCCTACACAATCTTCTTTACGTGCAAACAAGACAGTTCCCTGTTACTTTTACTTCAATGGATTTTGCAATAAAGGCGAGAGATGCTCATTTTTGCATGGGCCTGATTTTAGCTCTTTTCCTGGTAAGCCTGGGAAGAATGACTCTGGAAGCAATGATGCCCTGCCCCCAGAAAATAAAACATCACCCGGAAATAAAGCAAGTGTAGCAATTACAACTGAGACATATCCTGATCCAAATGAAATTGCCCTAAAGGCTCTGCATAATTGTAAATTTGACCGTATTGAGGATCCTCAGCAATCAGTACTAAAAAATGTTAAACCGCAAAATACTTTGCCAGACGTATCTGCTTATGAATATAAAGAAGCCCCGGTAATTTGGCGTGACTATGTATATCCAGAAAAGGACTTTGTTCATAGCATTTCCCATATATCCACTGATCGTAGAACAGGCGAGCAAGTGCATAATCACATGGAACCTGAGGAACGATTGGAATCGTCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGGCCCGGGCCTATGAGGATAATTCTGAATATTTACCAGTTGATAGGGAACACAGGGAATTGAATGGGCAGTACTTGCAGTATGAATTTAAAGACACCGTTGAGTATGATCCTGAATGCCCTGAAGCTGACATTTTGTATGAAGAGATGTATGATGGTTACAGATTTATGGATGGTGATCATATTCTTGCTAATGACAGAAGAGTTCCTGCTTTTTCCAGAGAGAGAATCATAGACTCTATATTGTCCAAGAAGATGATTCGGATGCCACCTGAAATGACTGTTTGTGGCAGGAACTTAGATCTACGAGACCATCTGAGGAGACGAAGGGAATTTAATGATCGACTGGTTACAGGCTTTTTAAGAAGACGTGAATCATCTTGTCTGGTGATTCAGAACCGAGAAAGGTTTCGAAGACATGGTTTTGATCCGCAGCTTAGTAGAAGGTTGACGGCTGAGGTGGGATTCAACACTTTAGACTCAAATGGAGAGTTTGAAACTCGTTCAATTTCTAATAGTCACAGGTTTTTTAGGCACCCTATGCAACATTCACCAAGGAAGCTGCAGCATTATAGAGAAAACCGGGGTAAACAGCAGTTTTTTCCACCTAAAATATTCAGGAAACCATTTTCAAAGCGAAGGAGATATGCTCCGGTGTCTACTGACGCCGCATTTCACGGGCCTAAGACTCTAGCAGAAATCAAAGAAGAGAAGGTGTCGGCTGCAGAAAGAGGGCATTTCAATAGTACTTCAGCTGACATCCAGGACCCCAAACCTCTAAGTGAAATCCTCAAGGACAAGAAGAGGTTGGATTGTGAATGA 1569 0.4219 MDEDLLKQNTDCVYFLASPLTCKKGADCEYRHNEIARLNPRDCWYWISGKCLNPTCAFRHPPLEGHTGVPSEPTQSSLRANKTVPCYFYFNGFCNKGERCSFLHGPDFSSFPGKPGKNDSGSNDALPPENKTSPGNKASVAITTETYPDPNEIALKALHNCKFDRIEDPQQSVLKNVKPQNTLPDVSAYEYKEAPVIWRDYVYPEKDFVHSISHISTDRRTGEQVHNHMEPEERLESSPGFDVLVDDEMEARAYEDNSEYLPVDREHRELNGQYLQYEFKDTVEYDPECPEADILYEEMYDGYRFMDGDHILANDRRVPAFSRERIIDSILSKKMIRMPPEMTVCGRNLDLRDHLRRRREFNDRLVTGFLRRRESSCLVIQNRERFRRHGFDPQLSRRLTAEVGFNTLDSNGEFETRSISNSHRFFRHPMQHSPRKLQHYRENRGKQQFFPPKIFRKPFSKRRRYAPVSTDAAFHGPKTLAEIKEEKVSAAERGHFNSTSADIQDPKPLSEILKDKKRLDCE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0903 522 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Lele23g0903 522 MobiDBLite consensus disorder prediction 113 137 - -
Lele23g0903 522 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 521 - -
Lele23g0903 522 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Lele23g0903 522 Gene3D - 71 167 - -
Lele23g0903 522 Gene3D - 3 64 - -
Lele23g0903 522 MobiDBLite consensus disorder prediction 123 137 - -
Lele23g0903 522 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
Lele23g0903 522 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Lele23g0903 522 SUPERFAMILY CCCH zinc finger 82 105 IPR036855 GO:0046872
Lele23g0903 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Lele23g0903 522 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Lele23g0903 522 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Lele23g0903 522 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Lele23g0903 522 Pfam Zinc-finger containing family 7 63 IPR041686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0903 Lele-ChrLele23 14376396 14379444 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele23g0903 zf-CCCH_3 1.1e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0903 23 14376396 14379444 Lele23g0903 23 14376396 14379444 ECH
Lele21g1143 21 8869056 8872111 Lele23g0903 23 14376396 14379444 hybridization
Lele22g1146 22 8794138 8797276 Lele23g0903 23 14376396 14379444 hybridization