Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0894 ATGGCATGGTCTAATGGTGGTAACTTATCGGCCCAGAAGTGGGCTCGCCGGACTCGGCCTAGCTACGTTTCTCGTTGGAGGAACAATGGCATGCCTGGTTTCAACAATGTGAATTCATTCATGTCTGCAAATGGGTCAGCTCAGTCTGGTTTCGCTTCCTTCAACTCTTACAATTCCAGACAACAAGCTTCGGGTGGTGCGCGTTACGGTCGTTTCGGTGGTCGTGGTCGTGGTCGTGGTAGAGGCCGGAGGTTTGATCAACCGGATGAGACTGATGAGCCGAACCGTTACCCGAATCGAAACGGTTTTGGGATTCCTGGCGCGCTTGAGACTACGGAGAGTTTCGAAGAAGATGCCGATGACTCTGGTGGTATCAATTTTGACGCATATGAAGATATTCCAGTGGAGGTCAGTGGTTCCGACGTACATCCACCGGTCAATACCTTCGCAGAAATAGAGTTGAATGAGGGTTTGAGCAAGAATATCAAGCGATGCAAGTACGTTAAACCCACTCCGATTCAGCGTCATGCGATTCCTATCGCCGTTGCTGGTCGCGACTTGATGGCTTGTGCTCAGACTGGGTCGGGGAAGACGGCGGCGTTCTGTTTCCCCATTATATCTGGGGTTTTGAAGGATCGTTCTAGGTTTTTGCCTACGGCTCGTGAGGGCTGGACGGCGTATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTATCATGCCAGATTCATGATGAGGCTACGAAGTTCGCTTATCAGACCGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCACCGATTTTTCAGCAGCTTCGTAATTTAGAAAAAGGAGTGGACATCTTAGTTGCAACTCCTGGGCGCCTAGTTGATTTAATTGAGAGAGGTAGGGTTTCGCTCGCACGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACAATGCTCTTCAGTGCTACGTTCCCAGATGATATACAGAAGCTTGCGGCGGATTTTCTTTCAAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCTAGCACTGAATTGATTGTACAAAAAGTTGAACTCGTTCAGGATATGGACAAAAGAAACCATCTTGTGGATCTTCTCCGTTCTCAAAGGGTAAATGGGCTCAATGGAAAGCAAGCTTTGACTCTAGTATTTGTTGAAACTAAAAGAGGAGCAGATGCCTTGGAAAATTGGCTGTCGAGAAAAGGTTTTCCGGCTATTGCAATACATGGGGACAAAGTTCAAATGGAGAGGGAAAGAGCCTTGAGATATTTCAAAAGTGGTGCTACTCCTATTTTGGTCGCGACTGATGTTGCTTCAAGAGGTTTAGACATACCGCACGTGGCTCATGTTGTCAATTTCGACTTGCCAAAAGATATAGATGGCTATGTTCACAGAATTGGCAGAACTGGTCGTGCCGGAAGGTCTGGTTTGGCCACTGCTTTCTTTAGTGATCAAAACATCCCTCTTGCAAAGTCCCTTGCTGAACTCATGCAAGAAGCAAACCAAAAGGTTCCCTCTTGGCTCACCCAATATGCAACAGAGAGTTCTTCATATGGCTTCCGTAGCAGCGGCAGCAGAAGGGGGCCGTGGTCTGGTAATGGCAAGTATGGCGGCCATGACTTTAGAAGCATGACTCAATATGAAGGGTATAACAACCACTATGAGGATCCAGGTTTTGCTGAGAACAACCGTGGCACTATAGCTACAGCTTCTGATATCTCTAATTCTTACAATGATTCTTATGATATAGCAAATACAGTTCCTCCTACTAGCAGCAATTACCATGACAACGATGCTGCTGACGCTTATTATGGAAGCGGGAGAGCCGATGGGCCAAACGGGCGTGCATCTGTTGTTCCTACTGGATGGGACTAG 1965 0.4728 MAWSNGGNLSAQKWARRTRPSYVSRWRNNGMPGFNNVNSFMSANGSAQSGFASFNSYNSRQQASGGARYGRFGGRGRGRGRGRRFDQPDETDEPNRYPNRNGFGIPGALETTESFEEDADDSGGINFDAYEDIPVEVSGSDVHPPVNTFAEIELNEGLSKNIKRCKYVKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSRFLPTAREGWTAYPTALIMSPTRELSCQIHDEATKFAYQTGVKIVAAYGGAPIFQQLRNLEKGVDILVATPGRLVDLIERGRVSLARIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPDDIQKLAADFLSNYIFLAIGRVGSSTELIVQKVELVQDMDKRNHLVDLLRSQRVNGLNGKQALTLVFVETKRGADALENWLSRKGFPAIAIHGDKVQMERERALRYFKSGATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGRSGLATAFFSDQNIPLAKSLAELMQEANQKVPSWLTQYATESSSYGFRSSGSRRGPWSGNGKYGGHDFRSMTQYEGYNNHYEDPGFAENNRGTIATASDISNSYNDSYDIANTVPPTSSNYHDNDAADAYYGSGRADGPNGRASVVPTGWD 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0894 654 CDD DEADc_DDX3_DDX4 148 370 IPR044763 GO:0003724|GO:0005524
Lele23g0894 654 Pfam DEAD/DEAH box helicase 171 353 IPR011545 GO:0003676|GO:0005524
Lele23g0894 654 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Lele23g0894 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 519 IPR027417 -
Lele23g0894 654 MobiDBLite consensus disorder prediction 618 654 - -
Lele23g0894 654 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 542 - -
Lele23g0894 654 MobiDBLite consensus disorder prediction 1 20 - -
Lele23g0894 654 Gene3D - 367 546 IPR027417 -
Lele23g0894 654 Pfam Helicase conserved C-terminal domain 388 503 IPR001650 -
Lele23g0894 654 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 542 IPR001650 -
Lele23g0894 654 SMART helicmild6 422 503 IPR001650 -
Lele23g0894 654 SMART ultradead3 166 379 IPR014001 -
Lele23g0894 654 MobiDBLite consensus disorder prediction 79 96 - -
Lele23g0894 654 MobiDBLite consensus disorder prediction 62 108 - -
Lele23g0894 654 CDD SF2_C_DEAD 376 512 - -
Lele23g0894 654 Gene3D - 106 366 IPR027417 -
Lele23g0894 654 FunFam Probable ATP-dependent RNA helicase DDX4 110 366 - -
Lele23g0894 654 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 364 IPR014001 -
Lele23g0894 654 FunFam ATP-dependent RNA helicase RhlB 367 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0894 Lele-ChrLele23 14286215 14290026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0894 129 525 Eukaryotic Initiation Factors Gene Family AT3G19760 32.412 1.96e-59 203