Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0841 ATGATTCTTCCGAAGGAGATTTTCCCTTCTTCGCATTGGCCCTCGAACTTCCTGAAGTTTCCTCCTTTCCCTTCATCGGTTACTCGAACTTCCCCTTCTGTCTCATGCTCGCTCATCAAGGAGCCTGAGTCTGTTCTAGCAGATAAAGATAATGGGTCGGTGGTATTGCAGCTACCCGATTCGTTTGGCCGATTCGGTAAATTTGGCGGCAAGTACGTCCCTAAAACTTTAATGCATGCGCTTAGACAGCTTGAGGATGCGTTTCATTCCCTTTCTGCTGATGAAGATTTTCAGAGAGAACTTAATGGGATTTTGAAAGACTATGTGGGCAGGGAGAATCCTCTTTATTTTGCAGAGAGGTTGACAGAGCATTACAAGCGTCCTAATGGTGAAGGGCCTCACATTTATTTGAAGAGGGAAGATCTTAACCACACCGGGGCTCACAAAATTAACAATGTTGTTGCCCAAGCTTTGCTTGCCAAGCGGTTGGGTAAAAAACGCATTATTGCTGAAACTGGGGCTGGGCAGCATGGAGTTGCCACTGCTACCGTATGTGCTAGATTTGGTTTAGAATGCATAATTTATATGGGTGAGCAGGATATGGAAAGACAAGCACTTAATGTCTTCAGGATGCGTCTTCTTGGTGCTGAGGTAAGAGCAGTCCACTCTGGCACAGCGATTCTGAAGGATGCTACATCAGAAGCTATAAGGGATTGGGTGACAAACGTGGAGACAACTCATTATATTTTAGGTTCTGTTGCGGGTCCCCATCCATATCCTATGATGGTAAGAGAGTTCCATTCTATGATTGGCAAGGAAACCAGAAAACAAGCTTTGGAAAAGTGGGGAGGGAAACCAGATGTGCTGGTTGCATGTGTTGGTGGAGGTTCAAATGCTATGGGACTTTTCAATGAATTTGTTGATGACAGAGATGTTAGGCTGATTGGTGTGGAAGCAGCAGGGTTTGGCCTTGACAGTAGCAAGCATGCTGCAACATTAACAAGGGGAGAAGTTGGGATTTTACATGGGGCTATGAGCTATCTGTTGCAGGATGATGATGGCCAGATAATTGAGCCTCATTCTATTAGTGCAGGCTTGGATTACCCTGGTGTTGGACCTGAACTTAACTATTTGAAAGATTTAGGATGTGCTGAAGAAGCAATGGAAGATTATACCTATCTGCTAAATACTTCTCGCATAAAAGTTCTTCAAGCTCAAGATGATGTGGTTAATTCCATGGAGGAAGCTGCAGCGAAGGAACTTTTTAATATACCAGTGTGTGATCATGAGACTATTTTTGCTTACCTTTTGTGTCACCACTGTACCCATGTCATCTTTAAAAATCATGCCGCAGCAATTTCTGATGCTATTTCACGACAACTTACCGTCTGTAAGCATGTGGACTTGGATGTTAAAGTGTTGCCTGTGACAGAGTTTGAGACTGAAAGAGCCTTATGTCCTTCTGCGAGGTCAGAAAGAAGCCCTGCATTTGGTGGAGCATGTGCTAGATTCAGCTGCACAAGAGTCTATGGGTTTGTTCAAAACAGTACAACTGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGGGGCAATGTACTATGTCCTTAGAGATCCAACTACGAAGCCTAGAGGATATGATCCAATGACAGAAGCTCTATTGTTATGGGAAGGGACCCCTACGTTACTAAGACAATGTACAACCTTTCTCCTTTCGCAGGGACAAAACTAG 1734 0.4412 MILPKEIFPSSHWPSNFLKFPPFPSSVTRTSPSVSCSLIKEPESVLADKDNGSVVLQLPDSFGRFGKFGGKYVPKTLMHALRQLEDAFHSLSADEDFQRELNGILKDYVGRENPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNVVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGEQDMERQALNVFRMRLLGAEVRAVHSGTAILKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHSMIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFNEFVDDRDVRLIGVEAAGFGLDSSKHAATLTRGEVGILHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPELNYLKDLGCAEEAMEDYTYLLNTSRIKVLQAQDDVVNSMEEAAAKELFNIPVCDHETIFAYLLCHHCTHVIFKNHAAAISDAISRQLTVCKHVDLDVKVLPVTEFETERALCPSARSERSPAFGGACARFSCTRVYGFVQNSTTGEKVAMLIGKWDGAMYYVLRDPTTKPRGYDPMTEALLLWEGTPTLLRQCTTFLLSQGQN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0841 577 Hamap Tryptophan synthase beta chain [trpB]. 58 478 IPR023026 GO:0000162|GO:0004834
Lele23g0841 577 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 59 400 IPR036052 -
Lele23g0841 577 TIGRFAM trpB: tryptophan synthase, beta subunit 63 418 IPR006654 GO:0004834|GO:0006568
Lele23g0841 577 FunFam Tryptophan synthase beta chain 266 425 - -
Lele23g0841 577 Pfam Pyridoxal-phosphate dependent enzyme 109 325 IPR001926 -
Lele23g0841 577 Gene3D - 65 267 IPR036052 -
Lele23g0841 577 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 142 156 IPR006653 GO:0004834|GO:0006568
Lele23g0841 577 FunFam Tryptophan synthase beta chain 117 265 - -
Lele23g0841 577 CDD Trp-synth_B 80 389 IPR006654 GO:0004834|GO:0006568
Lele23g0841 577 PANTHER TRYPTOPHAN SYNTHASE-RELATED 57 387 - -
Lele23g0841 577 Gene3D - 110 418 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0841 Lele-ChrLele23 12516595 12522192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0841 390 424 Primary Pumps ATPases(2) AT4G11150 65.714 1.52e-08 53.9