Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0770 ATGTCCGTGAATTGGTTCTCTTTAGCTTCATTTTCTCTCGCATCATCATCATCTGCATCCATCACACCGTGCTCTTTGATCTTTCTAGTGTTACTTTGGCGTTGTTCTTGCCCAGTTTTCCTGTTTCGATATCCACCTCTCATCACAGTCACTGGTCGAGAATTCTGTTCACTTACCTTTAAACGAGGGGGAGATTCTCTGGATTTGACAGTGGTTCACCTGGAATTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCCCTTGTGTTGGTTACTGTGGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCGTCTACTTTTGGCTCTGTGTTGCTGGATTGTTTCAGTCATATACATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAAGTGGTGGGAGAAGATCTCTGGCGATAGTTGTAAGATTCATCAACACTACTGCCAGTGTATTGGGTCCAAGAAAGTTCCGAGAACTCTGTGGAGAAGCCTTTTGCTGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAGTTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGATTATGCTCCTGAGGCACTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTGCTCAAAACAAATCATCTAGGAGTTATCCTCACTTTCGCAGTCTACAACACAGATCTTCCATCAAATGCAACCCCGAATGACAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGTTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATTGGAATCCTTGTTATTGCGCTCCTTGTAGGGCATATTTTTCATGCTACCGTGAATCGAATTGCTAAAGTGGAGTATGATTACCTTGAGATGATGGAACTTAAAAGACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATACGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCTTCTTATTGAAGAAGTTGTCAATTCAATTGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGATATATGTCAAAGTTGGAAGGGATTCAGTTCTGTCAGTCAAGAGGGACCTCTGGGTTCTTTCTCATCTTCCTCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGCATACCAAAGATTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAATACTCAGCAAATTAGCAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGGGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAGTCCAACTTTCATTGTAAAACCTCTCAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTTGCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATGGTGTGAACCGAACAGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATGGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACAGCAGACGTGATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCGACACTCACGCCTGTAAATAGGGTCAAAAGTTTCCTGACATTTGAATTGGTTGTTAAATGGTATGGAAACCTGTTGGTTCTCCCTCGTCCTTCCATTGAGCACCAGGCCCGGGGAGAATCGAGGAATTGGGGCGGGTGTAAAATACGAGAGAATACTGATTCCGGGTGTAGTGATGAATTAGCTTCTGAGATCAACAATGGAGAGTGGAAGTTGCACCGATTGTTAAGCGCGCAAGTTCGGAGGAAGGAAGGAAGGAGAAGAAGGTGTGGAGGCGGCGATAATCGTCCGATGGATCCAGACGCTTTGGCGAAGGCATTCGTTGAGCACTACTACACCACCTTCGACACCAACCGTGGCGGCCTCGCCAATCTCTACCAGGAAGGCTCCATGTTGACTTTCGAAGGCCAGAAGATCCAAGGCGCTCAGAACATTGTTGCCAAGCTCACTAGTCTACCCTTCCAGCAGTGCCAGCACAGCATCACCACCGTTGATTGTCAGCCCTCCGGCGTCAACGGCGGCATGCTTGTCTTCGTCAGCGGCAACCTCCAGCTTGCCGGTGAACAGCACGCCCTTAAGTTCAGCCAGATGTTCCATTTGATACCGACACCACAGGGAAGCTACTATGTGTTGAATGACGTATTCCGTTTGAATTATGCTTGA 4041 0.4462 MSVNWFSLASFSLASSSSASITPCSLIFLVLLWRCSCPVFLFRYPPLITVTGREFCSLTFKRGGDSLDLTVVHLELARSRIQYLLELFLVPLCWLLWWMSLLYVVGFGLKLGRLLLALCCWIVSVIYMYWFNNGGIMETKVSFLGGGAGKMRLKWWEKISGDSCKIHQHYCQCIGSKKVPRTLWRSLLLTWVLGWTMVSLWIFCFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNATPNDRIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNRIAKVEYDYLEMMELKRRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVLLIEEVVNSIEVATSKDTLSGFPVADICQSWKGFSSVSQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSIPKIGSTFTFTAVFTNESPSSTEGNTQQISNQPNLASSEFQGMNALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCGVPPKLFVLVNSSSSSRTSSVTLGVHSPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLCHLLRGRKILIVDDNGVNRTVAAGALKKYGADVVCVNSGKDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNMGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTSTLTPVNRVKSFLTFELVVKWYGNLLVLPRPSIEHQARGESRNWGGCKIRENTDSGCSDELASEINNGEWKLHRLLSAQVRRKEGRRRRCGGGDNRPMDPDALAKAFVEHYYTTFDTNRGGLANLYQEGSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSITTVDCQPSGVNGGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGSYYVLNDVFRLNYA 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0770 1346 CDD PRTases_typeI 944 1018 IPR000836 -
Lele23g0770 1346 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 654 812 IPR003594 -
Lele23g0770 1346 ProSiteProfiles CHASE domain profile. 255 481 IPR006189 -
Lele23g0770 1346 SMART CHASE_2 255 456 IPR006189 -
Lele23g0770 1346 CDD HATPase_EvgS-ArcB-TorS-like 659 812 - -
Lele23g0770 1346 CDD REC_hyHK_CKI1_RcsC-like 991 1119 - -
Lele23g0770 1346 SUPERFAMILY CheY-like 837 965 IPR011006 -
Lele23g0770 1346 ProSiteProfiles Nuclear transport factor 2 domain profile. 1229 1343 IPR018222 -
Lele23g0770 1346 ProSiteProfiles Histidine kinase domain profile. 549 814 IPR005467 -
Lele23g0770 1346 SMART REC_2 989 1119 IPR001789 GO:0000160
Lele23g0770 1346 FunFam Nuclear transport factor 2 1222 1346 - -
Lele23g0770 1346 ProSiteProfiles Response regulatory domain profile. 990 1123 IPR001789 GO:0000160
Lele23g0770 1346 Gene3D - 510 605 - -
Lele23g0770 1346 ProSiteProfiles Response regulatory domain profile. 842 964 IPR001789 GO:0000160
Lele23g0770 1346 SUPERFAMILY CheY-like 986 1123 IPR011006 -
Lele23g0770 1346 PRINTS Bacterial sensor protein C-terminal signature 739 753 IPR004358 GO:0016310|GO:0016772
Lele23g0770 1346 PRINTS Bacterial sensor protein C-terminal signature 774 792 IPR004358 GO:0016310|GO:0016772
Lele23g0770 1346 PRINTS Bacterial sensor protein C-terminal signature 757 767 IPR004358 GO:0016310|GO:0016772
Lele23g0770 1346 Pfam Response regulator receiver domain 991 1118 IPR001789 GO:0000160
Lele23g0770 1346 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 528 608 IPR036097 GO:0000155|GO:0007165
Lele23g0770 1346 SMART HKATPase_4 654 814 IPR003594 -
Lele23g0770 1346 SUPERFAMILY NTF2-like 1226 1344 IPR032710 -
Lele23g0770 1346 PANTHER TWO-COMPONENT HISTIDINE KINASE 194 1116 - -
Lele23g0770 1346 CDD NTF2 1225 1345 IPR018222 -
Lele23g0770 1346 FunFam Histidine kinase 4 514 605 - -
Lele23g0770 1346 Pfam His Kinase A (phospho-acceptor) domain 542 607 IPR003661 GO:0000155|GO:0007165
Lele23g0770 1346 Pfam Nuclear transport factor 2 (NTF2) domain 1230 1343 IPR002075 -
Lele23g0770 1346 Gene3D - 984 1129 - -
Lele23g0770 1346 CDD HisKA 542 603 IPR003661 GO:0000155|GO:0007165
Lele23g0770 1346 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 596 809 IPR036890 -
Lele23g0770 1346 Pfam CHASE domain 258 454 IPR006189 -
Lele23g0770 1346 SMART HisKA_10 542 607 IPR003661 GO:0000155|GO:0007165
Lele23g0770 1346 Gene3D - 206 258 - -
Lele23g0770 1346 Gene3D - 1223 1346 - -
Lele23g0770 1346 FunFam Histidine kinase 4 259 488 - -
Lele23g0770 1346 Gene3D CHASE domain 259 488 IPR042240 -
Lele23g0770 1346 Gene3D - 606 816 IPR036890 -
Lele23g0770 1346 Gene3D - 831 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0770 Lele-ChrLele23 6624977 6635892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0770 99 1127 Miscellaneous Gene Families AT1G27320 68.130 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele23g0770 CHASE 4.3e-37 CL0165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1267 21 20495622 20499767 Lele23g0770 23 6624977 6635892 hybridization
Lele22g1246 22 13771529 13773452 Lele23g0770 23 6624977 6635892 hybridization