Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0729 ATGAGGTCAAAGTATTGGGCTTATAATACGGTAGGATTTCCCAAAGCAGCCCAAACATCACACAGAGCTGTATTGGCGGGAAATTTTGATTTAAGCTCCGAAGAAGAACACCCGCGTCATTTGGGTATTGCTATTTCAAATAATCTTCTCCGTTCCGACCAAACAATGGATTCCGATTCAGACTCAGATGGTTCTCATGTTTCTGCTACGCCCCCTAGGGAAGAGCCTCCTCCATCCTTGACTGCGCAACCGCCACCGCGGCGGCCAAAACCTGTTCTCGTTTCCAACAAATTGAAATCGTCTCCCTCGTCCAGCAAGAAATCTTCAAAATCCAAATTACGCCCTTCAAGACCAGTAAAACCGTCGTCCAAACAGGAATCCACTCAAGAGGAATTTCCCCGTAAATCCTTTTGCCTTCCTACTCTACCCTTCCAAATTCGTAGAGCTTCTGATTGTGTCACCCAACTGTCAACTGCACAGTCCTGTGAAACCCTCCCAGCTGGGTACTTCTCCAAATCCGTGTCTTTCTCGAAAATTCGAAGGCCCTTCCTGAGTTTTACAGATTCACCTGAAAATGAACCTCCTCTTGATTTTGTATCCAATCCAGCCCTCAAGAACGAGAGGAATGAGAGTTCTTGTCAGCAGGGTGATTCTATTCCACTGGAAGTAGAGCGCGAAAGTCTAAGAGCAAGGAATGAGACAAAATTAGGAAAGAGACTTCCTAATCTGATAGGAGCTAATGTGCCGGCGCCATCTGTTAAGGTGCGAAAATGTGGTGGTGAGGGAAATTTTGTTAGGTTGAATCTAAATAGTAAGAGGTGGAAGTCGCGGAACCATGGGAAAAAGAAAAATTTTGCATATAGTAAGCGTAGAAGTTACACGAGAAATAAAGTTAAATCGAAGTCTGAAGATCAGGATCAAATGCAGTCGGTCTTTGATTCCAAGGAGGATGCGTTTGTTGTGCAGACCGCACAAAAGAAGTCCAGGGATTCTCGTGGAACCAAAGAATTTGATTGCAAAGTGATTGAAGAGGTGATTTCAGCAGTTCGAGATGACCCATCTGATGAGAATCTGGTGAAGTTGCTACGGTTAGTTTATGGCTATGATTCTTTTCGGGACTGTCAATTGGATGCAATCAAGATGGTACTTGCTGGAAAGTCGACTATGCTTATTTTACCCACTGGTGCTGGTAAGTCCTTGTGTTATCAGTTACCTGCAATAATTTTACCTGGAATTACCCTGGTCGTCAGTCCATTGGTAGCCTTGATGATTGATCAACATAGAAAATTGCCTCCTATGATTAACGGAGGACTTATATGCAGCAGTCAGACACATGAAGAAGCCTCTGAAACGCTGAAGCATCTTCAAGAAGGTGCATTAAAGGTGCTTTTTGTTTCACCAGAGAGGTTACTGAATGAAGAATTTTTGTCAGTAATTTCTACCGCTTCAACTGTATCTCTTGTTGTGGTTGATGAAGCCCATTGTATATCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTTAGGGCATCTTTTCTCCACAACAAGCTAAATGCATGTTCTTTTCTGGCAATGACAGCAACTGCTACAACCATAACATTAAATTCCGTCATGTCTGCTTTAGATATTCCTTGCACAAATCTTATTCAGAAGACAGAGTTAACAGACAATTTGCATTTATCGGTCTCTTTAGCAAGAAATAGAATGAAAGACTTATTGATGCTGATCAAGTCTCCTCCATATGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTCTGAAACTGATATAATTAGCAAATACTTGAGTGACAACAATATCTCTGCTAAGAGTTATCATAGCAGTATCCCTGCAAAGGAGCGTAGCTATGTACAGGAGTTGTTTGGTTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGATTAGACAAAGGGGATGTTGGAGCTGTAATTCATTACAGTCTGCCAGAAAGTCCTGAGCATTATGTTCAGGAGATTGGACGGGCTGGAAGGGATGGGAGGTTGTCCTTTTGCCACCTCTTTTATGATGATGAGACATATGTCAAACTCCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCAGTGAACAAGTTTCTCTGCGAAGTATTTCCTGCTCACGGGATTTCCAATGGCCAAGTATGTGCCTTGGTCAAAGAATCTGCTTCACGGAGGCTTGACATGAAGGAAGAGGTGATGCTGACGCTTTTGACACGCTTGGAGCTCGGTGATGTGCAGTACTTACGTTTACTTCCACAGATAAATACCACTTGCACTTTGAGTTTTCACAAGACTCCCCCTACAGTACTTGCCCAAAAGGACTCTGCTGTTGCTGCAATACTGGAAAGGTCTGAAAAGAAGCAAGGGCTATATGTCTTTGACATGCCCTCTGTGGCTAATGACATGGGAGTTACAGTTGCTGAAATATCGAATCAGTTGCACAATCTAAAGTTGCTTGGAGAAATAACATTTGAGATGAAGGACTTGGCCTATTGCTATACGATTGTTAAAGCACCAACAGATTTTTTTGCGTTGTCAGCAAATCTTACACGATGGTTATATGAGTTTGAAAGATCAAAGGTACGGAAACTGGACGCGATGTATGATGCGGCATATCATGCAGTAAATATTTGTGACAAGAAACCAGGTTGCAGTGGTTCCGATCACACACCATGCTTGCAAAGGAACATCTTAGATTACTTTGATGGGGCCGATAATAATTCCTTGTCCAAGAAGTTGGATCAGAGCAGTCCATTTTTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCAAATTCACGCCAAGAGCCATTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCTGCTGCTTGGTCTAAAACTCATTTCTGGGGAAGATATAGGCATGTAGACTTTCAGGTGGTGATGGAAGTAGCAAAGGAAGAACTCAAGAATTCTGTTGGAAAAGACAGCTCTAGCCATTCAAGATAA 3039 0.4274 MRSKYWAYNTVGFPKAAQTSHRAVLAGNFDLSSEEEHPRHLGIAISNNLLRSDQTMDSDSDSDGSHVSATPPREEPPPSLTAQPPPRRPKPVLVSNKLKSSPSSSKKSSKSKLRPSRPVKPSSKQESTQEEFPRKSFCLPTLPFQIRRASDCVTQLSTAQSCETLPAGYFSKSVSFSKIRRPFLSFTDSPENEPPLDFVSNPALKNERNESSCQQGDSIPLEVERESLRARNETKLGKRLPNLIGANVPAPSVKVRKCGGEGNFVRLNLNSKRWKSRNHGKKKNFAYSKRRSYTRNKVKSKSEDQDQMQSVFDSKEDAFVVQTAQKKSRDSRGTKEFDCKVIEEVISAVRDDPSDENLVKLLRLVYGYDSFRDCQLDAIKMVLAGKSTMLILPTGAGKSLCYQLPAIILPGITLVVSPLVALMIDQHRKLPPMINGGLICSSQTHEEASETLKHLQEGALKVLFVSPERLLNEEFLSVISTASTVSLVVVDEAHCISEWSHNFRPSFMRLRASFLHNKLNACSFLAMTATATTITLNSVMSALDIPCTNLIQKTELTDNLHLSVSLARNRMKDLLMLIKSPPYVEVQSIIIYCKFQSETDIISKYLSDNNISAKSYHSSIPAKERSYVQELFGSNKIRVVVATVAFGMGLDKGDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCHLFYDDETYVKLRSLMYSDGVDEYAVNKFLCEVFPAHGISNGQVCALVKESASRRLDMKEEVMLTLLTRLELGDVQYLRLLPQINTTCTLSFHKTPPTVLAQKDSAVAAILERSEKKQGLYVFDMPSVANDMGVTVAEISNQLHNLKLLGEITFEMKDLAYCYTIVKAPTDFFALSANLTRWLYEFERSKVRKLDAMYDAAYHAVNICDKKPGCSGSDHTPCLQRNILDYFDGADNNSLSKKLDQSSPFLRADIKVFLQSNSQAKFTPRAIARIMHGIASPAYPSAAWSKTHFWGRYRHVDFQVVMEVAKEELKNSVGKDSSSHSR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0729 1012 MobiDBLite consensus disorder prediction 275 307 - -
Lele23g0729 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 728 IPR001650 -
Lele23g0729 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 699 IPR027417 -
Lele23g0729 1012 MobiDBLite consensus disorder prediction 47 67 - -
Lele23g0729 1012 MobiDBLite consensus disorder prediction 71 91 - -
Lele23g0729 1012 Pfam DEAD/DEAH box helicase 373 532 IPR011545 GO:0003676|GO:0005524
Lele23g0729 1012 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 486 495 IPR002464 -
Lele23g0729 1012 MobiDBLite consensus disorder prediction 275 296 - -
Lele23g0729 1012 FunFam ATP-dependent DNA helicase Q-like 5 557 748 - -
Lele23g0729 1012 CDD SF2_C_RecQ 558 690 - -
Lele23g0729 1012 MobiDBLite consensus disorder prediction 47 133 - -
Lele23g0729 1012 SMART helicmild6 600 681 IPR001650 -
Lele23g0729 1012 PANTHER DNA HELICASE RECQ FAMILY MEMBER 347 862 - -
Lele23g0729 1012 MobiDBLite consensus disorder prediction 96 126 - -
Lele23g0729 1012 FunFam ATP-dependent DNA helicase Q4 339 549 - -
Lele23g0729 1012 Gene3D - 343 548 IPR027417 -
Lele23g0729 1012 Gene3D - 558 746 IPR027417 -
Lele23g0729 1012 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 361 706 IPR004589 GO:0004386|GO:0006310
Lele23g0729 1012 SMART ultradead3 367 563 IPR014001 -
Lele23g0729 1012 Pfam Helicase conserved C-terminal domain 585 680 IPR001650 -
Lele23g0729 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 549 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0729 Lele-ChrLele23 5835987 5842996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0729 366 713 Eukaryotic Initiation Factors Gene Family AT3G19760 23.562 5.05e-16 79.7