Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0661 ATGCTAATCGTACTGACGAGTCTCCACGGTTGTTCCCATGCACAGCCGGGCACATCAACCACCTGGGCGGGCTCAACCTTGAAAGATGCTCTCACGAAAACTCACTTCAGTATTATTGTCATCGCTTTCCTCTCTTCCATTGTCTTCCTGATTTTCTTCTCCCTCTTTATTCGTCACTGTGTTGATACCTGTGCCACCACTAATACTCATCCTAACAACGCCGTCGCCGGCCGCCGCCGTGATGCCATCGATAAATGTCCCGTCCTTGTGTATTCCGAGGTGAAGGAGCTCAGGATCGGGAATTCTGCTCTCGAGTGTGCGGTTTGCTTGAGTGAGTTCGAGGACACAGACAAAATCCGCTTGTTGCCAAAATGCAATCACGTTTTCCATCCCGCTTGTATTGATAGATGGTTCGCTTCACGCCTCACTTGCCCTGTTTGTCGCGCCAAGATCACTCTGTCAGATTGCGACGACAATGCCGACGCCGTGACGACGGAGTCGAATCACGATGAATCGCCTGTTTCAGATGCCGAAATAATCGAGCAACAGAGCACTGAGGAGTCGCCGGAGCCACAACCGGAGGAAACGATTGAAGTGGATGATGAAAGCGGAAGAACCGGTGTTCCGGTGCAGACTGAAACTCGGTCGAGAACGGCGGCGGAAATTTTTGAGAGGTCATATTCGACGGGTCACTCTCTGATAATGGAAAGCGAGGGGTTGATTGAGAGGTACACGTTGAGATTACCTGAGTGCGTGAGGGAGGAGATATTTAGGAGGGAGAAGAGGAATAGGCTTCGACGTTGCGCGAGCAGCAACGACGTCGTTTTGAGGGGAGAATGGAGCTTGAAGAATGGGAGTGATAATATGGAGAGGTGGGTGTTGCAGTCCATGACGCCACCTTTCGTTTCAAAGAATAGGAGCTCTGTGAAATTCATGGGGCAGAATACTGATCAAAGCTCGTCGCCGCCGCCGCCTAGGCCTCCGGTTTGA 990 0.5152 MLIVLTSLHGCSHAQPGTSTTWAGSTLKDALTKTHFSIIVIAFLSSIVFLIFFSLFIRHCVDTCATTNTHPNNAVAGRRRDAIDKCPVLVYSEVKELRIGNSALECAVCLSEFEDTDKIRLLPKCNHVFHPACIDRWFASRLTCPVCRAKITLSDCDDNADAVTTESNHDESPVSDAEIIEQQSTEESPEPQPEETIEVDDESGRTGVPVQTETRSRTAAEIFERSYSTGHSLIMESEGLIERYTLRLPECVREEIFRREKRNRLRRCASSNDVVLRGEWSLKNGSDNMERWVLQSMTPPFVSKNRSSVKFMGQNTDQSSSPPPPRPPV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0661 329 FunFam E3 ubiquitin-protein ligase ATL6 66 154 - -
Lele23g0661 329 SMART ring_2 106 147 IPR001841 -
Lele23g0661 329 MobiDBLite consensus disorder prediction 304 329 - -
Lele23g0661 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 262 - -
Lele23g0661 329 CDD RING-H2_PA-TM-RING 105 148 - -
Lele23g0661 329 MobiDBLite consensus disorder prediction 304 319 - -
Lele23g0661 329 Pfam Ring finger domain 105 148 IPR001841 -
Lele23g0661 329 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lele23g0661 329 MobiDBLite consensus disorder prediction 162 215 - -
Lele23g0661 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 158 IPR013083 -
Lele23g0661 329 SUPERFAMILY RING/U-box 89 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0661 Lele-ChrLele23 5102181 5103170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0661 1 323 Rapid Response to Elicitors AT3G05200 32.565 9.28e-47 161