Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0654 ATGAAGAGATCACTCGAAAGCTCCGATTCCTTGGGTACTTTGATCACTATGTGTCCTCCATCCACAGATGAACACAGTCCTAGGAACAATAATAACAATTATGTGTATGGGAGGGAGTTCCAAGCCATGATGTTGGATGGATTAGACGAGGAAGGGTGCGTGGAAGAATCGAGCCATTTAATGATGTCGGAGAAGAAACGGCGTCTGAGTGTTGATCAAGTTAAGGCTTTAGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAGCCTGAGAGGAAAGTGAAGCTTGCTCAAGAACTTGGATTACAACCTCGTCAAGTTGCAGTTTGGTTTCAGAACCGTCGTGCACGATGGAAAACGAAGCAATTAGAGAGAGATTATGGCGTTCTTAAAGCCAATTATGATGCCTTCAAAGTTAACTTCGACACCCTCCAACAGGACAACGAAGCATTGCTCAAAGAGATTAAGGAATTGAAATCGAGATTAATCGAGGAGCAGACAGACAGTGATATTTCAGTGAAGGAAGAGATGACGACGGGGTCTGATTCCGACGATAAAAACGTCGAACGGAGCATCCCGCCACCGGCTGAAACCTCCATTATTATTGAATCAGAGTGCAAGGACTTGAATTATGGCTGCTTCAATGGAGTAGTCGTCGGAGGCGGTGGTGGTGCTTCACTCATAGCACCAGTGGATCAATTCAAAGACGGTGCTTCCGATAGCGACTCAAGCGCAATCTTGAACGAAGATAATAATAAAAGCCCCAACGCCGCCGTTTCATCGCCGGCTGGTCTTCGTCATCAGAGCCACCACCACCAACACTCCCTTCTGATGTCTCCGACGTCGTCCATGAACTGCTTTCAGTTCCAGAAAACAACATACCAGAGTCAGTATGTTAAGATGGAAGAACACAACTTCTTCAGCGCCGAAGAATCCTGCAATTTCTTCTCCGAAGAACAAGCACCCTCCCTCCATTGGTACTGTTCTGATAATCAATGGAGTTAA 1002 0.4591 MKRSLESSDSLGTLITMCPPSTDEHSPRNNNNNYVYGREFQAMMLDGLDEEGCVEESSHLMMSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDAFKVNFDTLQQDNEALLKEIKELKSRLIEEQTDSDISVKEEMTTGSDSDDKNVERSIPPPAETSIIIESECKDLNYGCFNGVVVGGGGGASLIAPVDQFKDGASDSDSSAILNEDNNKSPNAAVSSPAGLRHQSHHHQHSLLMSPTSSMNCFQFQKTTYQSQYVKMEEHNFFSAEESCNFFSEEQAPSLHWYCSDNQWS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0654 333 MobiDBLite consensus disorder prediction 237 273 - -
Lele23g0654 333 Gene3D - 62 127 - -
Lele23g0654 333 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Lele23g0654 333 MobiDBLite consensus disorder prediction 1 32 - -
Lele23g0654 333 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Lele23g0654 333 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lele23g0654 333 Coils Coil 133 167 - -
Lele23g0654 333 MobiDBLite consensus disorder prediction 7 32 - -
Lele23g0654 333 MobiDBLite consensus disorder prediction 168 190 - -
Lele23g0654 333 MobiDBLite consensus disorder prediction 168 195 - -
Lele23g0654 333 MobiDBLite consensus disorder prediction 237 262 - -
Lele23g0654 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 305 IPR045224 GO:0003700
Lele23g0654 333 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lele23g0654 333 SMART HOX_1 63 124 IPR001356 GO:0003677
Lele23g0654 333 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Lele23g0654 333 CDD homeodomain 65 121 IPR001356 GO:0003677
Lele23g0654 333 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lele23g0654 333 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lele23g0654 333 SUPERFAMILY Homeodomain-like 60 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0654 Lele-ChrLele23 5029173 5030474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0654 1 332 Homeobox Transcription Factor Family AT2G22430 45.706 1.61e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele23g0654 Homeodomain 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0654 23 5029173 5030474 Lele23g0654 23 5029173 5030474 ECH
Lele23g0654 23 5029173 5030474 Lele24g1316 24 19180277 19181589 ECH
Lele21g1368 21 22138051 22139362 Lele23g0654 23 5029173 5030474 hybridization
Lele22g1358 22 19389722 19391029 Lele23g0654 23 5029173 5030474 hybridization