Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0639 ATGGAGGAGGAAGAACATGAGGTGTACGGAGGCGACATCCCAGACATGGGCGAGATGGAAGGAGATTTGGATTCGCATCATGCCGATGTCGATATGTCTGGTGCTGACGACGACGCCGTCAAGGAGCTGGACGAGATGAAGAAGAGATTGAAGGAAATGGAGGAAGAAGCCGCGGCTCTCCGTGAAATGCAAGCTAAGGTCGAGAAGGAGATGGGTGCGGCTCAAGATCCTGCGAGTGCAGCTGCTTCTCAAGCAAGCAAGGAGGAGGCAGATTATCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTCCAGTCATGTGGGACGGTGAATAGGGTGACTATCCTTACAGACAAGTTTGGTCATCCAAAAGGTTTTGCTTACGTGGAATTCCTTGAACCTGAAGCTGCTCAAGAGGCTCTTGGCTTGAATGAATCTGAATTGCACGGTCGTCAATTGAAGGTCATGCCAAAGAGGACCAATGTCCCCGGAATGAAACAGTATCGCCCCAGGCGTTTCAATCCTTACTCGGGGTATCGCTTCAGGAGGCCATTCCCTTCTCCTTACTTTTACTCGCCTAATGGTTATGGGAAGGTTCCCAGGTTCAGAAGGCCAAGTCGTTACATGCCATATTATTAG 666 0.4955 MEEEEHEVYGGDIPDMGEMEGDLDSHHADVDMSGADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPASAAASQASKEEADYRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFLEPEAAQEALGLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPYSGYRFRRPFPSPYFYSPNGYGKVPRFRRPSRYMPYY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0639 221 SUPERFAMILY RNA-binding domain, RBD 83 191 IPR035979 GO:0003676
Lele23g0639 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 186 - -
Lele23g0639 221 Gene3D - 32 165 IPR012677 -
Lele23g0639 221 MobiDBLite consensus disorder prediction 1 34 - -
Lele23g0639 221 MobiDBLite consensus disorder prediction 67 88 - -
Lele23g0639 221 Coils Coil 36 70 - -
Lele23g0639 221 MobiDBLite consensus disorder prediction 19 34 - -
Lele23g0639 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Lele23g0639 221 CDD RRM_II_PABPs 94 164 - -
Lele23g0639 221 SMART rrm1_1 94 165 IPR000504 GO:0003723
Lele23g0639 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0639 Lele-ChrLele23 4868193 4872092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0639 90 164 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 7.86e-11 59.3