Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0629 ATGCAAAATTCCGACTCAGTTTCTCCGGCGCCGTCGGCCCACACTGACACCAGTGTGATTCGAATCGATCATGTTTTGGATTCGAATATGATCTCGGATCCAAGGGTTGCCTTTCAGAACCTCTCGACGGTCCGAATGAGAATGGGTTCTCTACAACTCTTTCTATCTGAATCTATCACCACCAAAACTTCAGTCAACGAGGACCAGATGGATATGGTGTCGAACGAAATCGTTTCTGCTGTCCACCAGATTATCGTCAACGGCGCCGCCCTGGTGTCATACTCTCAGAATTTCACTGCTGCCGGCGCATCGCTATCAAAAGCCTCGGGAGACTTACCGGAGCCACCAGATATGGTATATTTGACGAGGCTAGGATTGGATTATTCTGGCACTGAGAAAGGTAATTTGAAAATTAAGGTTATTGACGATGAAGAAGGGAAGGATGATGACGAAAATTGCGAGATCGTGGAGCTCGACGCCGTCGAATTGCTGGCGGAGCACGTTCATTTCTGCGAAATCTGCGGGAAAGGGTTCAGGCGCGATGCGAATTTGCGAATGCATATGCGCGCACATGGAAACCAATTCAAAACCCCCGAAGCGTTGGCGAAGAAACCCTCAGATAAATCCGACGTCGCTCTTCGCAAAACAGTGCGATTCTCTTGCCCATTCGAAGGTTGCAATCGGAACAAGATTCACAAGAAATTCCGGCCTCTGAAATCGATCATTTGCGTGAAGAACCACTTCAAAAGAAGCCATTGTCCGAAAATGTATTCCTGCAATCGGTGCCACAAGAAGAATTTCTCTGTGCTTTCAGATTTAAAGAGCCATTTGAAGCATTGTGGGGAGACATCAAAGTGGAAATGCTCCTGTGGGACCACATTTTCAAGGAAGGATAAATTGTTTGGTCACATAGCTCTGTTTGATGGGCATATGCCAGCTCTTCCTGGGGATGAGGAAGAGAAAGGCAAGCAAATGGTAAAGGAGCATGATGATGAAGATATGAATATGATGTTCAAGGAAGAAGATTCAGGGGTAAATTATTTGGATGAGGATTTACCAGAAGGATTCTTTGACGATTTAGATGAAGTTGGCAACTACTCCTTAGATGAAGCTCTGGGCTTTCTCTAA 1128 0.4592 MQNSDSVSPAPSAHTDTSVIRIDHVLDSNMISDPRVAFQNLSTVRMRMGSLQLFLSESITTKTSVNEDQMDMVSNEIVSAVHQIIVNGAALVSYSQNFTAAGASLSKASGDLPEPPDMVYLTRLGLDYSGTEKGNLKIKVIDDEEGKDDDENCEIVELDAVELLAEHVHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKKPSDKSDVALRKTVRFSCPFEGCNRNKIHKKFRPLKSIICVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHLKHCGETSKWKCSCGTTFSRKDKLFGHIALFDGHMPALPGDEEEKGKQMVKEHDDEDMNMMFKEEDSGVNYLDEDLPEGFFDDLDEVGNYSLDEALGFL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0629 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Lele23g0629 375 SMART c2h2final6 219 252 IPR013087 -
Lele23g0629 375 SMART c2h2final6 169 191 IPR013087 -
Lele23g0629 375 SMART c2h2final6 257 279 IPR013087 -
Lele23g0629 375 SUPERFAMILY beta-beta-alpha zinc fingers 166 192 IPR036236 -
Lele23g0629 375 FunFam Zinc finger 45-like 166 192 - -
Lele23g0629 375 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 342 IPR044300 GO:0010044|GO:0010447
Lele23g0629 375 Gene3D Classic Zinc Finger 255 306 - -
Lele23g0629 375 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Lele23g0629 375 Gene3D Classic Zinc Finger 169 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0629 Lele-ChrLele23 4811773 4812900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0629 141 318 C2H2 Transcription Factor Family AT1G34370 60.541 5.15e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele23g0629 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1384 21 22325432 22326559 Lele23g0629 23 4811773 4812900 hybridization
Lele22g1377 22 19562427 19562789 Lele23g0629 23 4811773 4812900 hybridization