Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0612 ATGTCTAGAGACATGACGCAGCAGAATGTGGTGGTCTCTGAGGCCAATTCCAGAATCAACCTGGCTTTCACTGCCGCCGTCTCTAACTCCTTCAATTTCACCACCGCACCTCAGAAGCCCCCCACCCCACCCGGTGCAGGCGGCGGCTTCATCTCCATCTCAAGGAATAAGAAGTTCCTGAAGACCCTGGACATCAATGGAGCCGCCCAAATCAATTCCTGGGTTGAATCCATTCGTGCCTCTTCCCCTACCCACCACCATTCCACTTCTCTCACCACCTCTCCTTTCGACCCAGAACACAACTCTTGGATCCTTCATCACCCATCTGCATTAGAGATGTTTGAGGAAATCATCGACGCTTCCAGAGGAAAACAAATAGTGGTGTTTCTCGACTACGACGGCACGCTCTCCCCCATCGTCGACGACCCTGATCGTGCTTTCATGTCCGAAGAGATGAGGAAGACGGTGAGAAACCTGGCGAGGTGTTTTCCGACTGCTATAGTAAGCGGAAGATGCAGAGACAAGGTGTACAACTTTGTTCGCTTGGCAGAGCTATACTATGCAGGAAGCCATGGAATGGACATTAAAGGCCCGACTAAAATCTCTAAATACAATAAAGAAATCAAAGCGATTCTGTTTCAGCCTGCCTGTGAATTTTTACCCATGATAGACAAGGTTTATCAACTTTTAATTGAGAAAACCAGCTCAACTCCAGGAGCTAAGGTGGAGAACAACAAGTTCTGTGTATCTGTTCATTTTCGCTGTGTTGACGAGAAGAAATGGAGCGAGCTGGCGAGCCAAGTTAGATCAGTGTTAAAGGAGTTCCCAAAGCTTCGTCTTACTCAAGGAAGAAAGGTACTTGAGATTCGTCCCCCGATTAAATGGGACAAAGGAGAAGCCTTGGAATTTTTGTTAGAGTCACTTGGTTTTGCCAACTGTACAGACGTGTTCCCTGTTTACATTGGCGACGATCGATCCGATGAAGATGCATTCAAGAAACTTAGAGAGAGAGGACAAGGGTATGGCATTCTTGTCTCCAAATTTCCGAAAGATACGAGTGCATCTTACTCTTTGCAAGAACCCGATGAGGTGATGGATTTTCTGCAGCGATTAGTGGAATGGAAGAGGGTTTCGGTGAGAGCACGTTGCAGGGTGTAA 1158 0.4741 MSRDMTQQNVVVSEANSRINLAFTAAVSNSFNFTTAPQKPPTPPGAGGGFISISRNKKFLKTLDINGAAQINSWVESIRASSPTHHHSTSLTTSPFDPEHNSWILHHPSALEMFEEIIDASRGKQIVVFLDYDGTLSPIVDDPDRAFMSEEMRKTVRNLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPTKISKYNKEIKAILFQPACEFLPMIDKVYQLLIEKTSSTPGAKVENNKFCVSVHFRCVDEKKWSELASQVRSVLKEFPKLRLTQGRKVLEIRPPIKWDKGEALEFLLESLGFANCTDVFPVYIGDDRSDEDAFKKLRERGQGYGILVSKFPKDTSASYSLQEPDEVMDFLQRLVEWKRVSVRARCRV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0612 385 Pfam Trehalose-phosphatase 129 361 IPR003337 GO:0003824|GO:0005992
Lele23g0612 385 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 48 379 IPR044651 GO:0004805|GO:0005992
Lele23g0612 385 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 128 336 IPR006379 -
Lele23g0612 385 FunFam Trehalose 6-phosphate phosphatase 222 381 - -
Lele23g0612 385 FunFam Trehalose 6-phosphate phosphatase 126 211 - -
Lele23g0612 385 TIGRFAM T6PP: trehalose-phosphatase 124 372 IPR003337 GO:0003824|GO:0005992
Lele23g0612 385 CDD HAD_TPP 127 365 - -
Lele23g0612 385 Gene3D - 126 211 IPR023214 -
Lele23g0612 385 Gene3D - 239 382 IPR023214 -
Lele23g0612 385 SUPERFAMILY HAD-like 127 375 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0612 Lele-ChrLele23 4634421 4639453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0612 115 371 Trehalose Biosynthesis Gene Families AT1G70290 27.636 1.99e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1403 21 22500861 22503771 Lele23g0612 23 4634421 4639453 hybridization
Lele22g1395 22 19742911 19745912 Lele23g0612 23 4634421 4639453 hybridization