Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0597 ATGTTCTGTCTGCCTCTCCAGTCTAGATCTGGAGAGTATCAGCGTGCTGGATCGATTTACTTGGGGGAAAGAAATGGCGAGGGGAACATTCCAGATTCAGAGCCCCCAACTCCGCACTCTGTTTTGAAGATGGGATTGAGAAAATCTCATCCTTTAGCTGTACAACTTAAGTTTCTTGCATCCTTCACTGTTTGCAGAGATCGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTAGCCCAATGCATTGAGCAGCTGCGGCAGAGCTCATCCTCTGTACAAGAGAAGGATTACTCCTTGAGGCAGTTATTGGAGCTTATTGACATGCGCGAAAATGTGTTTAGTGCTGTTGGATCTCATTCTCAGGCAGTACCAGTGCTTGTTTCTCTTCTCCGATCCGGTTCATTGAGTGTGAAGATTCAGGCAGCGACTGTTTTGGGCTCTCTTTGTAAAGAAAATGAGCTAAGAGTGAAAGTCTTGCTTGGAGGATGCATTCCCCCATTGCTTGGGCTACTTAAATCCAGTTCAGCCGAAGGTCAAGTTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGGGGCTCAAAAGACCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTTCCTGCGCTGTGGGAGCAGCTTCAGAAGGGGCTGAAGACTGGAAATGTAGTTGGTGTTTTATTGACCGGAGCCTTGAAAAATCTGTCCAGTAATACTGCGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAATGAAGTTATTGACAACAGGGCATCCTAGCACTTCAGCTAATGTGTGCTTCTTACTTGCCAGCATGATGATGGAGGATGCATCTGTTTGTTCAAATGTGTTGACTTCAGAGGCGACAAAACAACTCCTGAAATTATTAGGCCCCGGTAATGATGCCCCTATTAGAGCTGAAGCAGCTGGTGCTCTGAAATCCTTGTCTTCGCAGTGCAAAGAAGCAAGGCGCGAGATATCTAATTCTAATGGCATTCCTGCTTTGATCCATGCTACCATAGCTCCTTCAAAAGAGTTCATGCAGGGTGAGCATGCTCAAGCATTGCAGGAAAATGCTATGTGTGCTCTAGCTAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACCTCAGCTACTCAAATTGCAGATACACTGGGGGCTTTGGCTTCCGCTCTTATGATATATGATAACAAGGCCGAAGCTACTAGGACGTCAGATCCGTTGGTAGTTGAGCAAACATTGCTCGAGCAATTCAAATCTCAATCGCAGTTTCTTGTGAAGGAAAGAACAATTGAAGCCCTGGCTAGTTTGTATGGAAATCCCGTACTGTCAATTAAACTTGCAAATTCAGATGCAAAACATTTGCTAGTCGGATTAATAACGATGGCTGTTAATGAAGTGCAAGATGACCTTATAAGAGCCCTCCTTACATTGTGCAACAATGAAGGCAGTCTTTGGCGTGCCCTTCAGGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTCTCATCAGAACAACAGCAAGAATGTGCTGTTGCTCTGCTGTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCATTAGTTCAAATTTTAGAGACAGGATCCACAAAGGCAAAGGAAGACTCGGCAAAAATCCTTACAAACCTGTGCAATCACAGTGAAGATATACGAGCTTGTGTGGAAAGTGCTAACGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGGAGCTCAAATGGGAAGGAGATAGCGGCAAAAACCTTAAATCACTTAATTCATAAATCTGATACTACCACAATCAGTCAGCTTACGGCATTATTGACAAGTGATCTACCCGAATCTAAGGTCTATGTTTTGGATGCTTTGAGAAGTATGCTGTCAGTTTCCCCTCTTAGCGACATTCAACGAGAAGGTAGTGCTGCGAGTGATGCAATTGATACAATGATAAAATTAATGAGCTCTACCAAAGAAGAAACTCAGGCTAAGTCAGCATCAACTCTAGCAGGCATCTTTGAAATGAGGCAAGATGTGCGTGAAAGCAGCGTCGCTGTAAAATCCCTTTTGTCTGCCATGAAGTTGCTTGATACTGAATCTGAAAGTATCCTAATAGAGTCTTCACGCTGCCTGGCGGCAATATTTCTTTCGATTAAAGAGAACAAGGACGTAGCTGCTGTTGCTAGAGATGCATTACTCCCCTTAGTTGCACGTGCAAATTCTTCTACTTTGGAAGTTGCAGAGTTGGCAACATGTGCGGTGGCTAATCTTATTTTAGATAGTGAGATTTCAGAGAAAGCTGTTGCCAATGAAGTTATCATGCCAGCTACCAGAGTATTACGTGAAGGTACAATGTCTGGAAAAACCCATGCAGCATCAGCAATTGGTCGGCTCATACATTCTCGACAAGTTGATTATTCTATAACTGAATGTGTGAATCATGCTGGGACTGTACTTGCTCTGGTTTCGTTCCTGGATTCTGCTATTAATGGATCAGTTTCCACATCAGAGGCTATAGAAGCACTTGCTGTTCTGTCCAGGTCGGAACAGAACGGTGCACATATTAAACCAGCATGGACTGTATTGGCTGAATTCCCTGAAAGCATAAACCCAATAGTGCTGTCTATTGCTGATTCAACACCAGTGTTTCAGGATAAAGCTATAGAGATATTGTCCCAGTTATGCAGGGATCAGCCTGTTGTTCTTGGAAACAATGTTGTTGTGGCCCCTGGATGCTTGTGTTCATTGGCTAAAAGGGTAATTGTTACGAAAAATGTAAAGGTTAAAATTGGGGGAGCTGCACTTCTGATTTGTGCTGCCAAAGTAAACCACCAGAGACTGGTGGAGGAACTCAATCAATCAAACTTGTGTTGTGATCTTGTCCAATCTCTTGCTAATATGCTTTCTTCTGCACCATCTTGTTTTGCAAACCGGGGTGCAGAAAACAAGGAACTCATTAGCATTTTGATACACAGAAATGAAGATGCCAATGGTGATGAATCCAACACAGGCACTGCCAGTATATCTGATGCCAACTTAGCCATATGGTTATTGTCTATTCTTGCTTGTCATGATGAAAATTGCAAAATTGCGATAATGGAAGCTGGAGCAATTGACATTCTCACTGAAAGAATCTCAGACTGTTACTCACAATATACCCAGATTGATTACAAAGAAGATAGTAGCATGTGGATTTGTGCATTGTTGTTGGCTGTACTATTTCAAGATAGAGATATTATCAAAGCAAATGCAACCATGAAATCTATACCAGCTGTTGCCAGTTTATTGAAGTCAGAGGAATTAGCTAACAGATATTTTGCAGCACAATCAATGGCTAGCCTGGTCTGTAACGGTAGCAGGGGAACACTACTGTCTGTTGCAAACTCTGGGGCTGCAAGTGGGCTAATCTCCTTACTTGGCTGTGCTGACATGGATATACAAGACCTTCTGGACCTGTCAGAGGAATTCTCTTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAGAGATTGTTCAGAGTTGATGACATTAGGGTTGGTTCCACTTCACGGAAGGCAATACCGGCACTTGTTGATCTGCTCAAACCAATCCCAGATCGCCCAGGAGCACCCTTTTTAGCTCTTGGACTTCTAACTCAGCTCGCCAGAGATTGCCCATCGAATAAGATTGTAATGGTAGAATCTGGGGCCCTGGAGGCACTAACAAAGTATCTTTCATTGGGTCCCCAAGATGCCACTGAAGAAGCCGCTACTGATCTATTGGGAATTCTGTTTGATAGTGCTGAGATACGGAGACATGAGGCAGCATTTGGTGCTGTTACTCAACTCGTAGCTGTGTTGCGTTTGGGGGGAAGAGGTGCAAGGTACAGTGCTGCCAGAGCCCTTGAAAATTTGTTCTCTTCTGATCAGATTAGGAATGCAGAGACTGCTCGACAAGCTGTTCAACCTTTGGTGGAGATTCTTAACACTGGTTTAGAGAAGGAGCAGCATGCTGCAATTGCAACATTGGTTAGGCTCCTAAGCGAAAATCCTTCAAGAGCACTAGCTGTTGCTGATGTTGAAATGAATGCAGTAGATGTGCTTTGCAGGATCCTTTCATCAAATTGTTCATTGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGTTTTGTTTGGAAATACACGGATTAGGTCCTCAGTGGCTGCTGCACGCTGTGTTGAACCTCTAGTTTCTCTCCTTGTAAGCGAGTTTAGTCCTGCCCAGCATTCAGTGGTGCGCGCACTGGATAGGCTTGTTGATGACGAGCAATTGGCTGAACTAGTTGATGCGCACGGTGCCATTATTCCTCTTGTTGGTCTTCTCTACGGTAGGAATTATTTGCTCCATGAGGCCATTTCTAGAGCTCTGGTTAAGCTAGGGAAAGACAGACCTGCTTGTAAAATGGAAATGGTCAAAGCTGGAGTTATTGAAAGCATACTGGACATTCTCCATGAAGCACCTGATTATCTGTGTGCCGCATTTGCAGAATTGCTGCGTATCTTGACCAATAATGCCAGCATAGCTAAGGGGCAGTCTGCTTCTAAAGTGGTTGAGCCCCTATTTTTGTTGCTGACGAGACAAGAATTTGGGCCTGATGGACAGCACAGTGCGTTGCAGGTTTTGGTTAATATCTTGGAACATCCACAATGTCGTGCTGACCATAGATTGACATCGCACCAAGCTATTGAACCACTTATCCCCTTGCTCGATTCTCCAATACCAGCAGTGCAACAACTGGCTGCTGAGCTTCTCTCGCATCTCCTTTTGGAAGAACACCTTCAGATGGATCCATCTACACAGCAGGTAATTGGTCCCCTTATTCGTGTTCTGGGCTCTGGTATCCACATATTGCAGCAGAGAGCTGTGAAGGCCCTGGTTAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAACTCTCGAAAGTGATACTGCATGCTGATCCTTCACTTCCTCATGCTTTATGGGAATCTGGTGCTTCTGTTTTGTCAAGTATTCTGCAATTCAGTTCTGAATTCTACTTGGAAGTACCTATTGCCGTGTTGGTAAGATTGCTTCGTGCTGGCTCAGTGAGCACAGTTATTGGCGCATTAAATGCTCTTCTAGTGTTGGAAAGCGATGATGGGACTAGTGCAGAAGCAATGGCTGAAAGCGGTGCCATAGAGGCTCTCCTAGAGCTTCTAAGATCTCATCAGTGCGAGGAAACTGCTGCCAGACTATTGGAAGTATTGCTAAACAACGTCAAGATTAGAGATTCGAAAGCTACCAGATCAGCCATAGTACCGTTATCCCAGTACCTCTTGGATCCACAAACCCAAGGACAGCAGGCAAGGTTACTGGCAACTTTGGCTCTTGGCGATCTATTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCATGCCGTGCTTTGGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTCGCTATATGTGCTCTGCAGAACCTTGTGATGCATAGTCGATCAAATAGAAGAGCAGTTGCTGAGGCTGGTGGTGTACAGGTTGTATTGGATCTGATAGGTTCTAGTGATCCAGGAACATCTGTTCAGGCTGCAATGTTCGTTAAACTTCTCTTCTCTAATAATACAATTCAAGAATATGCATCAAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAAGCGTGAATGATGAGTATTTGAGGGCCTTGAATGCTCTGTTTAGCAACTTCCCACGACTGAGAGCAACTGAGCCAGCAACACTGAGCATTCCCCATATGGTTACATCATTAAAGACGGGTTCGGAGGCCACTCAAGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTCTCAAGATCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTACTACAGTACTTAATCCAGTCTGGTCCTCCTCGGTTTCAAGAGAAGACTGAATTCCTATTGCAGTGTTTACCTGGCACATTAGTTGTGATCATAAAACGTGGTAACAACATGAAGCAGTCAGTTGGAAACCCAAGTGTTTACTGTAAGCTTACACTTGGCAACACTCCTCCACGGCAAACCGCGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCTTGGTCCTTTGAGAGCCCTCCAAAAGGCCAAAAGCTTCATATTTCCTGCAAAAATAAGAGCAAAGTGGGAAAGAGTTCATTTGGGAAAGTAACAATCCAAATTGATCGCGTGGTAATGCTTGGATCTGTTGCCGGCGAATACACTCTTCTCCCACAAAGTAAAAGTGGTCCCCCAAGGAATTTAGAGATAGAATTCCAGTGGTCTAACAAATGA 6513 0.4436 MFCLPLQSRSGEYQRAGSIYLGERNGEGNIPDSEPPTPHSVLKMGLRKSHPLAVQLKFLASFTVCRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVQEKDYSLRQLLELIDMRENVFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIYAVSQGGSKDHVGSKIFSTEGVVPALWEQLQKGLKTGNVVGVLLTGALKNLSSNTAGFWNATIQAGGVDILMKLLTTGHPSTSANVCFLLASMMMEDASVCSNVLTSEATKQLLKLLGPGNDAPIRAEAAGALKSLSSQCKEARREISNSNGIPALIHATIAPSKEFMQGEHAQALQENAMCALANISGGLSYVISSLGQSLESCTSATQIADTLGALASALMIYDNKAEATRTSDPLVVEQTLLEQFKSQSQFLVKERTIEALASLYGNPVLSIKLANSDAKHLLVGLITMAVNEVQDDLIRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSTKAKEDSAKILTNLCNHSEDIRACVESANAVPALLWLLKNGSSNGKEIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVSPLSDIQREGSAASDAIDTMIKLMSSTKEETQAKSASTLAGIFEMRQDVRESSVAVKSLLSAMKLLDTESESILIESSRCLAAIFLSIKENKDVAAVARDALLPLVARANSSTLEVAELATCAVANLILDSEISEKAVANEVIMPATRVLREGTMSGKTHAASAIGRLIHSRQVDYSITECVNHAGTVLALVSFLDSAINGSVSTSEAIEALAVLSRSEQNGAHIKPAWTVLAEFPESINPIVLSIADSTPVFQDKAIEILSQLCRDQPVVLGNNVVVAPGCLCSLAKRVIVTKNVKVKIGGAALLICAAKVNHQRLVEELNQSNLCCDLVQSLANMLSSAPSCFANRGAENKELISILIHRNEDANGDESNTGTASISDANLAIWLLSILACHDENCKIAIMEAGAIDILTERISDCYSQYTQIDYKEDSSMWICALLLAVLFQDRDIIKANATMKSIPAVASLLKSEELANRYFAAQSMASLVCNGSRGTLLSVANSGAASGLISLLGCADMDIQDLLDLSEEFSLVRYPDQVALERLFRVDDIRVGSTSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFDSAEIRRHEAAFGAVTQLVAVLRLGGRGARYSAARALENLFSSDQIRNAETARQAVQPLVEILNTGLEKEQHAAIATLVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSLDLKGDAAELCCVLFGNTRIRSSVAAARCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVDAHGAIIPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGQSASKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADHRLTSHQAIEPLIPLLDSPIPAVQQLAAELLSHLLLEEHLQMDPSTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVVELSKVILHADPSLPHALWESGASVLSSILQFSSEFYLEVPIAVLVRLLRAGSVSTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRDSKATRSAIVPLSQYLLDPQTQGQQARLLATLALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNRRAVAEAGGVQVVLDLIGSSDPGTSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWATGSVNDEYLRALNALFSNFPRLRATEPATLSIPHMVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRSQSIAAADAIPLLQYLIQSGPPRFQEKTEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTAVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSSFGKVTIQIDRVVMLGSVAGEYTLLPQSKSGPPRNLEIEFQWSNK 2170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0597 2170 Gene3D C2 domain 2048 2170 IPR035892 -
Lele23g0597 2170 Coils Coil 316 336 - -
Lele23g0597 2170 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1399 1633 - -
Lele23g0597 2170 SMART arm_5 1417 1457 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1248 1289 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 155 195 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 287 328 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1458 1498 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 586 626 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 836 878 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1876 1916 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 113 154 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 544 584 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1585 1626 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1330 1371 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1749 1788 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 330 379 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1500 1540 IPR000225 GO:0005515
Lele23g0597 2170 SMART arm_5 1203 1246 IPR000225 GO:0005515
Lele23g0597 2170 Gene3D - 1197 1400 IPR011989 -
Lele23g0597 2170 ProSiteProfiles C2 domain profile. 2030 2147 IPR000008 -
Lele23g0597 2170 SUPERFAMILY ARM repeat 1599 2046 IPR016024 -
Lele23g0597 2170 Gene3D - 1715 1814 IPR011989 -
Lele23g0597 2170 SUPERFAMILY ARM repeat 1385 1675 IPR016024 -
Lele23g0597 2170 SMART C2_3c 2050 2146 IPR000008 -
Lele23g0597 2170 Gene3D - 66 425 IPR011989 -
Lele23g0597 2170 Gene3D - 426 663 IPR011989 -
Lele23g0597 2170 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 63 2170 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lele23g0597 2170 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1215 1259 IPR000225 GO:0005515
Lele23g0597 2170 Gene3D - 1526 1714 IPR011989 -
Lele23g0597 2170 Gene3D - 1815 2047 IPR011989 -
Lele23g0597 2170 Pfam C2 domain 2049 2139 IPR000008 -
Lele23g0597 2170 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2049 2170 - -
Lele23g0597 2170 SUPERFAMILY ARM repeat 527 928 IPR016024 -
Lele23g0597 2170 Gene3D - 664 1008 IPR011989 -
Lele23g0597 2170 SUPERFAMILY ARM repeat 952 1178 IPR016024 -
Lele23g0597 2170 CDD C2 2051 2141 - -
Lele23g0597 2170 Gene3D - 1034 1181 IPR011989 -
Lele23g0597 2170 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1844 1887 IPR000225 GO:0005515
Lele23g0597 2170 Gene3D - 1407 1525 IPR011989 -
Lele23g0597 2170 SUPERFAMILY ARM repeat 75 661 IPR016024 -
Lele23g0597 2170 Pfam Armadillo/beta-catenin-like repeat 123 153 IPR000225 GO:0005515
Lele23g0597 2170 Pfam Armadillo/beta-catenin-like repeat 544 583 IPR000225 GO:0005515
Lele23g0597 2170 SUPERFAMILY ARM repeat 1205 1414 IPR016024 -
Lele23g0597 2170 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 597 IPR000225 GO:0005515
Lele23g0597 2170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2049 2154 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0597 Lele-ChrLele23 4470442 4481113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0597 476 653 U-box Gene Family AT3G46510 30.435 1.18e-07 55.1