Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0547 ATGTGTTTCGTAAAGGTGGCGAATCCTACACACAATTTTGTTGATGAACACAACACAAACCCTAACGTTTCTTCTTCTTCGTCGTCCCTGCCGATTCTGTTTCCGGGTATGGATAGGGACAGAGAGATGTCTGAGATGATCTCTGCTTTGACTCACGTCGTCGCCGGAGATATTCCTGGAGATTCCAGTGAGATTTCTGGCGGTGACCGTGACGGTAGAGGTGGAGGGGGCTCTGTTACATTAAACTCGCCGTCGGATTCAACGACGACACCGTCTTCATCGTGTTCTTCGTCTTACGGGGGTAATAACTCTGTTTTGAAGAGAAGCAGGGAAGATAATAATATTAGAGGCTCTTCTTCCACTGCTATCATTAAAATAGTTGCAGGAGAAGGTTCAAGAGGAGAGAGAGTAGTGCAAATGGGGAATGCAGTGTATGAATATAGCTGTAATACAGAGATTGTGAGAGGCTCCGAAGAAGGAAGAAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCAGCTGAGATCAGAGATCCTTTTAAAGCTGCCCGTGTTTGGTTGGGCACTTTCGACACGGCCGAGTCGGCTGCCCGGGCCTACGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAGCTCAATTTCCCCGAAAATGTCAGACTCCGGCAGGAACCTCCTCCGGTGACCACCACGACGGCCGCGGCGGCAACCCATTTGAGAGGTTCAGGTTCTACGAGTACCCTTTTGTCCATTCCGACGTCCACCGAACCGATTGTTCATACTGAAGCTCTTCACCACCCCCACCCTCTCATGAGTTATCAGCCTCAGCCGACGGCGTCCAGTGATTTTTATAACTACTCACAGTTTCCGGAGTTTCCCATGAATTTTTACGATCAAATTGTTATGTCATCTTCAATGGCTCACCATTTTCAGTCGTCGGCGTTGCCGTCCGCTTTGTCATCGTCGTCGTCATCTTCTTCTTCTATGTTTGCATCTTCTATTAGTTCTCAGCATCAGCAAGGAGGTTTGCCGTTTCCAGGTTGGGTCATACCGGAAACGGGTCAAAGTGGTTCCGAATATGTACCATCAGCATGGTCATCTTCGGGTCATAGTGCTTCTTCCTCTGTATGA 1143 0.4926 MCFVKVANPTHNFVDEHNTNPNVSSSSSSLPILFPGMDRDREMSEMISALTHVVAGDIPGDSSEISGGDRDGRGGGGSVTLNSPSDSTTTPSSSCSSSYGGNNSVLKRSREDNNIRGSSSTAIIKIVAGEGSRGERVVQMGNAVYEYSCNTEIVRGSEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAESAARAYDEAALRFRGNKAKLNFPENVRLRQEPPPVTTTTAAAATHLRGSGSTSTLLSIPTSTEPIVHTEALHHPHPLMSYQPQPTASSDFYNYSQFPEFPMNFYDQIVMSSSMAHHFQSSALPSALSSSSSSSSSMFASSISSQHQQGGLPFPGWVIPETGQSGSEYVPSAWSSSGHSASSSV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0547 380 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Lele23g0547 380 PANTHER DNA-BINDING DOMAIN 116 336 IPR044808 GO:0003700|GO:0009873
Lele23g0547 380 Gene3D AP2/ERF domain 162 222 IPR036955 GO:0003700|GO:0006355
Lele23g0547 380 CDD AP2 163 222 IPR001471 GO:0003700|GO:0006355
Lele23g0547 380 MobiDBLite consensus disorder prediction 78 108 - -
Lele23g0547 380 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Lele23g0547 380 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Lele23g0547 380 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Lele23g0547 380 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Lele23g0547 380 MobiDBLite consensus disorder prediction 55 113 - -
Lele23g0547 380 MobiDBLite consensus disorder prediction 361 380 - -
Lele23g0547 380 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Lele23g0547 380 Pfam AP2 domain 163 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0547 Lele-ChrLele23 4013582 4015354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0547 171 274 AP2-EREBP Transcription Factor Family AT5G64750 66.667 1.38e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele23g0547 AP2 2.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0547 23 4013582 4015354 Lele23g0547 23 4013582 4015354 ECH
Lele23g0547 23 4013582 4015354 Lele24g1410 24 20108499 20110499 ECH
Lele21g1465 21 23055134 23056898 Lele23g0547 23 4013582 4015354 hybridization
Lele22g1458 22 20401556 20403381 Lele23g0547 23 4013582 4015354 hybridization