Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0545 ATGGACTTTGACGAGTATGATTACTTGGAAAAGACAGTGGTGGAGCAAGGAGATCAGGATTTGACGAAGAGCAAGGAGAAAAACGTTAAGAGTGAGAGGGCTTACCGGAAGCGTGATGTCGACGATGATGTTGACGGTGAAGATAGGAAGAGCAAGAGGTCCCGGGGCGACGACGATAATGGGTCGAGGAAAGATCGCGAGGACCGCGAGAGAGAACGGTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAGGGACGGTGATAGGGAGCGGGAGAGGAGGAGTAGTAAGGAGAGAGATAGGGAGAAGGACAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAAGGAGAGGGAGAGAAGAGATAGAGACAGGGAGAGGGAAAAAGAACGGGAGAGAAGGGAGAGGGAGAGGGAAAGGGAGAGAGAGAGGGAGGTGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGAAAGAGAACGGGAATTGGAGACTAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTGAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGAAAGGTGAGGGATGTCCGTTTGATCATGGATAGGAATTCAAGGCGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGTGATGTCAGTGCCAATGGGAATTGCCCTTTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACTACCAGTGTAGGTGCAGGGGTAGCAGGACCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTACCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTATACAATTTGCTAATCTCGAAAATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAGATCGCTGGTAGGACTATCAAGGTTTCATCAGTAACGGATCATGTTGGAGGCCAAGATACAAATGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCAATGCTTATGGCAAAGTTGGATCGCTCTGGTATTGCTACAAGCATTGCAGGGTCTGTGGGTGGTGTGCCTCTTCCGAATGGCTCAGCCCCTGCCCAGCAGGCTATTAGTTTGCCTGTTGGGGGTCCAGGTATAGTACCTGCATCAACTCTCCCAACAGCCATTATGCCTACCCCAGGAGCAGCAGAGCCAGTTGGAACCCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACGGAACCAGATTTTGATGAGGATATTAAGGAGGATGTAGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTGTGTTGACAAAAATAGTGCAGGTTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCTAGTGCTGCTCAGCAGGCAATGCACCTGAGATGGTTTGCCCGCAGGTTGATTTCAGCGATCTTCATGCAACCTCAGGTATATGAAGAAAAGTTTAAAGGAGAAGCATGA 1710 0.4749 MDFDEYDYLEKTVVEQGDQDLTKSKEKNVKSERAYRKRDVDDDVDGEDRKSKRSRGDDDNGSRKDREDRERERSSREKERHRSSRDRERDGDRERERRSSKERDREKDRDKERERERRDKERERRDRDREREKERERREREREREREREVRERSRRSRSRSDRDRERERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMGIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSVGAGVAGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFIQFANLENAKAAQSLNGKLEIAGRTIKVSSVTDHVGGQDTNAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSVGGVPLPNGSAPAQQAISLPVGGPGIVPASTLPTAIMPTPGAAEPVGTPSECLLLKNMFDPTTETEPDFDEDIKEDVAEECSKFGRVKHICVDKNSAGFVYLRFETVQAASAAQQAMHLRWFARRLISAIFMQPQVYEEKFKGEA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0545 569 Gene3D - 295 391 IPR012677 -
Lele23g0545 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 371 IPR000504 GO:0003723
Lele23g0545 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 263 IPR000504 GO:0003723
Lele23g0545 569 SUPERFAMILY RNA-binding domain, RBD 190 281 IPR035979 GO:0003676
Lele23g0545 569 Coils Coil 111 153 - -
Lele23g0545 569 CDD RRM1_RBM39_like 198 270 - -
Lele23g0545 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Lele23g0545 569 ProSitePatterns Rrf2-type HTH domain signature. 412 430 IPR030489 -
Lele23g0545 569 CDD RRM3_RBM39_like 474 556 - -
Lele23g0545 569 SUPERFAMILY RNA-binding domain, RBD 299 558 IPR035979 GO:0003676
Lele23g0545 569 SMART rrm1_1 476 553 IPR000504 GO:0003723
Lele23g0545 569 SMART rrm1_1 300 373 IPR000504 GO:0003723
Lele23g0545 569 SMART rrm1_1 198 270 IPR000504 GO:0003723
Lele23g0545 569 FunFam Splicing factor CC1-like 123 282 - -
Lele23g0545 569 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 392 493 IPR029123 -
Lele23g0545 569 MobiDBLite consensus disorder prediction 16 196 - -
Lele23g0545 569 FunFam Splicing factor CC1-like 283 388 - -
Lele23g0545 569 Gene3D - 127 284 IPR012677 -
Lele23g0545 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Lele23g0545 569 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 565 - -
Lele23g0545 569 Gene3D - 470 569 IPR012677 -
Lele23g0545 569 TIGRFAM SF-CC1: splicing factor, CC1-like family 87 565 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele23g0545 569 CDD RRM2_RBM23_RBM39 301 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0545 Lele-ChrLele23 3986152 3992399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0545 279 372 Eukaryotic Initiation Factors Gene Family AT4G34110 34.737 1.77e-07 52.4