Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0538 ATGGATTTGGACGATTTCCGATCAATATTGGAGACGGCTGGTGTGGATGTATGGATGTTCATCGACACTGCAATTGACGTGGCTTCCATTGAGTACAACAACGAGTTAAAGCGTCGAAGGGATGGAATCGTTCAGCGTCTCTACGAAGCCACCTCAGCTCCGGGACGGTGTCGGAACTGCGAAGCGATTAAGTCTAATGGCCACGAAATAAGCTCTCCAATTGAGAAGCAGAGCACTCCTGAACTGAAAAGAGATGCCTCACCTGTAACGCCGCACTCTATCGGTCAAGATGACGACTGTTTAGATCCTTACGGAGGCCTTCTCGATGATGAGCAAAAGAAGATTCAAGAGATCAAAGAACAACTTGAGGATCCTGACCAGCCTGTAGATTATGTTGTTGAGTTGCTACAGAATCTAGCGGACATGGATATTACATTCCAAGCATTAAAGGAGACTGATATTGGGAGGCACGTTAATCGGTTGCGCAAGCATCCATCCAATGATGTTCGGAAATTGGTGAAGCTACTTGTCAGGAAATGGAAGGAGATTGTAGACGAATGGGTGAAGGTAAATCAACCAGGCGATGTTGCTTCTGCCGTCATGGTTAATGGAGATTCGCCTATGCAGAAAAACGGCCAAAACGGGCACAACCAGATTCCTGATTTTGCATACTCGCCTAATCCGCAATATGGGAGTTCTGGGTCAGAGCGAAACTATTCAGAAACTGAACCAAAGCCAAAGACAGTTTCTCAAAGAGCGCCACCAAAACCAGCAACCCCAGTGCCTATTCCTGCTTCTGCACCTCAAAACAGAAAGAGAGAACAGAGAGAGAGCAATTTTGAAGCAGATAAACTTGCTTCGGCAAGGAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGGTGGAACCACTGCTTCTAACTTAATAACGATCCAAGTGATGGACATCCATGAGATCCCTAGACCCAAGAAAGCTTTCTTTGCAAAGAACAAAGGTGGCGCCGCTTCTCAGGGTAGGCACTGGTAA 1029 0.4655 MDLDDFRSILETAGVDVWMFIDTAIDVASIEYNNELKRRRDGIVQRLYEATSAPGRCRNCEAIKSNGHEISSPIEKQSTPELKRDASPVTPHSIGQDDDCLDPYGGLLDDEQKKIQEIKEQLEDPDQPVDYVVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRKLVKLLVRKWKEIVDEWVKVNQPGDVASAVMVNGDSPMQKNGQNGHNQIPDFAYSPNPQYGSSGSERNYSETEPKPKTVSQRAPPKPATPVPIPASAPQNRKREQRESNFEADKLASARRRLQENYKEAENGGTTASNLITIQVMDIHEIPRPKKAFFAKNKGGAASQGRHW 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0538 342 CDD TFIIS_I 112 185 - -
Lele23g0538 342 MobiDBLite consensus disorder prediction 204 247 - -
Lele23g0538 342 ProSiteProfiles TFIIS N-terminal domain profile. 110 187 IPR017923 -
Lele23g0538 342 Pfam TFIIS helical bundle-like domain 135 184 IPR017923 -
Lele23g0538 342 MobiDBLite consensus disorder prediction 270 285 - -
Lele23g0538 342 MobiDBLite consensus disorder prediction 200 285 - -
Lele23g0538 342 Coils Coil 282 302 - -
Lele23g0538 342 SMART TFS2_5 115 186 IPR003617 GO:0005634
Lele23g0538 342 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 113 192 IPR035441 -
Lele23g0538 342 MobiDBLite consensus disorder prediction 68 97 - -
Lele23g0538 342 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 108 195 IPR035441 -
Lele23g0538 342 MobiDBLite consensus disorder prediction 250 264 - -
Lele23g0538 342 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 342 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0538 Lele-ChrLele23 3940120 3942080 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele23g0538 Med26 1.3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1474 21 23117785 23119722 Lele23g0538 23 3940120 3942080 hybridization
Lele22g1463 22 20448178 20450152 Lele23g0538 23 3940120 3942080 hybridization