Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0537 ATGCTTCACCGAAACACGAGTGACACAGTTGGTGAGGTTTTCACTATGATCAAACTCCTCTTTCCCAAAAATGTCACTATTATATCATCTTTTTCTTCCTCCTCGCCGTTAGTTCGTCCTCTTCTCCAAATTTGTCACTTCTCAGCCTCTTCGTCATATAATCATTCATTCTTGAGAACCCATGATGAAGAAACACGAAATGATCGAAATGTACCAATTTCAGTGTGGTGGGAGTTCGATAGTTGTTATTTACCTGCTGATGTCAATGGTTATAGAATCACCCACTGCATAACAGAAGCTCTTAGGGCCAAAGGGATAAAGGGGCCGCTTCAAATCAAGGCTTTTGGTGATGTCTTGCGACTTTCAACTGCCAATCAGGAAGCTCTTTCTTCCACTGGGATAAATCTGGTCCACATTCCCAATGGTGGAAAAATTCCTGCCCATGGATCTCTTCTTGTTGAACTTATGCATTGGGTTACCAAAAATCCTCCACCAGCACATCTGTTTTTAATTACTGATAGTAGGGTTTTTGCTGATATGTTGCACCGTTTAAGATTGGATAACTACAACATCTTGCTCGCAACACCAACAAGGGCTCCTAATGTTCTCTGCAATGCAGCAACTATAATGTGGCATTGGAATTCATTAATTAGAGGAGAAAATGTTGATGGAAAACACTTTAATCATCCTCCTGATGGTTTGGATGGTTCTTGGTATGGACACCATAAGGTGCCTCTTGAAGACCCTTTCTTGAACGGGAAACAGTCACAGATGGAGGAGATATCTGTGCCTATCTTAGATTTGGAATTGCGTACAGTTCCAAAGGCAGTTGTGAGGCAAGTTCAAGAAATATTGAACTCATATCCAACAGGTATCTCTGTATCAGACCTTCGAGCAGAGATAGCAAAAGCTGGTATTTTCTTGGATAAAGACTACTATGGTCATAAAAAGTTTTCCCGCTTTCTTTCGTCAATAGCAAATGTACAACTTGTTCTTGGACCTGATAAATTGCTTTTTGTTCATCCCATTCCCCAAAAATGTCCTGGACCCTTTGATAACGGTTCTGTATCATCAACAGCATCTGTTTATGGTGAGGAGTTGAACCAGGTGGCAACCTCAAAGTTAAGTGGTGAGGTCGAAAAGGTGGTTGGGGATGCAGATGTGAAACCATTAAAATTATCTGTTGATGTTGAGGAGTTGAACCAGCTGGCTACTTCAAAGTTAAGTGGTGAGGTGGGAAAGGTGGTTGGGGATGCAGAAGTGAAACCATCAATGGCTTCATCTCAGGTCCCAGAAAATGTCCAACAGGTTGGGGATGTGGTTAATGCACATGCAACTGAGGGTCAATTGCCTCTGAAGGAGAATGAAATTCTTAGCTCTAGTGATGTAAGTCTGAGTGTCACTGAGAAAAATACAACTTCAGAGAACTACTCTAATGAACAAAGCAACACAGTTTCAGAAAAGAATGGCTCTTCAAATGATATTTCTGGAAAGTTAAAAGATGAGGACAAATATGACAAATCCACAAGAAAGGAAGCTGATGCAGTTTGTCACAATCCTCATTCTTTACCAGTTGATGAATCTGTGATTGACAAAAGCATTGATGAAAGCACTGAAACTTACAGCAAAAAGTTTGGCAAAAGTCTAAGTTTTTTTGCTTGGATTAGCAGCTGGTGGCCATTCAGGAAAAATGGTGGAAACTCTAATAATTTGACTGATCAACCGAATGAGATGCTTAGTAATACTGAAGAGCCCAAGCTTTCAAACCTGAGCCAGGCAACCCGTCATTCTGGAGAGTCTGGGTTGTCAGATCTGAAACAAACAGCTTGTCATTCTGAAGAGTCTGAGTTCACAGAACATAAACAAACAGTTAGTCACTCTCAGGAGCCCAAGTTATCCGAACCAAGACAGACAGTGAATTATTTTGTAGAGCCTGAGTTATTTTCTAGTAGTTCCTTTTGGAGTGACATGGAATCATTCATTTTTAATGCCAAAGGATTGACTCTAATCTCCCGTTCTAAAAGCAGGAAGGATATGATGCAGAAATTTCAGAGGTATGGACCTCAGGTTCTTAGTTCTCTTAGTGAAAATGATCTCCTTCAACTGGTGGATAGATTGATATCTGAGAAAAAATTGTTGGAGGAAAGGCCTTCTCTGACTTTCCCTTTCCGGGTCACTCCACTGGCTGGGAAAAACTCCGTGGGGCTATCACCTGGTGCAACTGGCTTGAGATCTCTCTTTCTAAGCAAAGAAGCACGAAGCGTGTTGCAAAAATCATCAGAAGGTGATATTGATAAAAGATATCAGAGTATGCCTCACGCTGGAGTTTCTTCACCTCCCATTAAAAATAAGCACACTGAAAAGTCGAGAACTGACACAATAGCAGATATTCGGAAACTTGTAAGTGACATATTGAAGGAACACTCAGATGGGTATAATATGGGTGGGATACCAAAACTTTTTTTGGAGAGGTATGGCTATCCTCTTGATGTTCAGAAGCTTGGTTATCAAAAGATGGCAACCTTATTACAGATTCTTCCTGGACTGAAAGTAGAGTCTTCTTACATCTTTCCCGCTGATCATCCCGGTTTTGCTTCTGACATGGAAATGTCAACTCTCAATACTTTAGTGAACAATTCAAGTGGTGCAGGGAAAAATTCGGATAGAGAGTCATCTGATTTATGCCCTAAAGATGATGGCAAAGACACTCAGTGGGAGGAATTAGGACCTTTGTCAGTCAGCAATTCGAACCAGAGTGGCCTGGAAACAAAATCAAGGCAAAAGGCTTTAAAGATGGAGACCTCACTACATTCTGATTATGAACCTTCACTTTCTGACGATGATTCTTCTGAATCTGAAGGAGATAGCTCTTGTTTAACTCAATCGGAAGAGGAAGGACGGTCAAAACATAATGAGGAAGACAGTTCTCTTTTGCAAACTCTGGAGTCATTTTACAGAAGCCGAGAAGACGATAATGTGAAGTCAGAAAATACTGACACCAAAAGCGATGGTCTGGCTGGTGTTTTACATCCACCCAGGCATTCCACTCCTGGAGTGCTTTCCAAAATTCATTCAGGGGCAGTTCCCAAAGAGAACCAAAGACCTCAAAAGAGCTATTCGTTTGTTGCCGACCCGGACTCACGAAAGAAGGACGAGCTAATCGATGGAATATTACAAAATTTGAGGAAATCAGATGAGTTGAAGATGCGAAATTGA 3216 0.4117 MLHRNTSDTVGEVFTMIKLLFPKNVTIISSFSSSSPLVRPLLQICHFSASSSYNHSFLRTHDEETRNDRNVPISVWWEFDSCYLPADVNGYRITHCITEALRAKGIKGPLQIKAFGDVLRLSTANQEALSSTGINLVHIPNGGKIPAHGSLLVELMHWVTKNPPPAHLFLITDSRVFADMLHRLRLDNYNILLATPTRAPNVLCNAATIMWHWNSLIRGENVDGKHFNHPPDGLDGSWYGHHKVPLEDPFLNGKQSQMEEISVPILDLELRTVPKAVVRQVQEILNSYPTGISVSDLRAEIAKAGIFLDKDYYGHKKFSRFLSSIANVQLVLGPDKLLFVHPIPQKCPGPFDNGSVSSTASVYGEELNQVATSKLSGEVEKVVGDADVKPLKLSVDVEELNQLATSKLSGEVGKVVGDAEVKPSMASSQVPENVQQVGDVVNAHATEGQLPLKENEILSSSDVSLSVTEKNTTSENYSNEQSNTVSEKNGSSNDISGKLKDEDKYDKSTRKEADAVCHNPHSLPVDESVIDKSIDESTETYSKKFGKSLSFFAWISSWWPFRKNGGNSNNLTDQPNEMLSNTEEPKLSNLSQATRHSGESGLSDLKQTACHSEESEFTEHKQTVSHSQEPKLSEPRQTVNYFVEPELFSSSSFWSDMESFIFNAKGLTLISRSKSRKDMMQKFQRYGPQVLSSLSENDLLQLVDRLISEKKLLEERPSLTFPFRVTPLAGKNSVGLSPGATGLRSLFLSKEARSVLQKSSEGDIDKRYQSMPHAGVSSPPIKNKHTEKSRTDTIADIRKLVSDILKEHSDGYNMGGIPKLFLERYGYPLDVQKLGYQKMATLLQILPGLKVESSYIFPADHPGFASDMEMSTLNTLVNNSSGAGKNSDRESSDLCPKDDGKDTQWEELGPLSVSNSNQSGLETKSRQKALKMETSLHSDYEPSLSDDDSSESEGDSSCLTQSEEEGRSKHNEEDSSLLQTLESFYRSREDDNVKSENTDTKSDGLAGVLHPPRHSTPGVLSKIHSGAVPKENQRPQKSYSFVADPDSRKKDELIDGILQNLRKSDELKMRN 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0537 1071 CDD PIN_limkain_b1_N_like 72 196 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 494 517 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 960 976 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 565 632 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 609 627 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 876 1050 - -
Lele23g0537 1071 PANTHER LIMKAIN B LKAP 54 749 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele23g0537 1071 MobiDBLite consensus disorder prediction 984 998 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 565 608 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 890 905 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 453 493 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 908 925 - -
Lele23g0537 1071 Gene3D - 788 855 IPR041966 -
Lele23g0537 1071 ProSiteProfiles OST-type HTH domain profile. 273 344 IPR025605 -
Lele23g0537 1071 Coils Coil 696 716 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 926 944 - -
Lele23g0537 1071 Pfam OST-HTH/LOTUS domain 797 852 IPR025605 -
Lele23g0537 1071 Pfam OST-HTH/LOTUS domain 275 330 IPR025605 -
Lele23g0537 1071 ProSiteProfiles OST-type HTH domain profile. 793 867 IPR025605 -
Lele23g0537 1071 CDD LOTUS 794 851 - -
Lele23g0537 1071 Pfam NYN domain 73 207 IPR021139 GO:0004540
Lele23g0537 1071 MobiDBLite consensus disorder prediction 769 789 - -
Lele23g0537 1071 CDD LOTUS 274 335 - -
Lele23g0537 1071 MobiDBLite consensus disorder prediction 452 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0537 Lele-ChrLele23 3932703 3936622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0537 74 219 C2H2 Transcription Factor Family AT5G61190 40.411 8.20e-29 123