Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0525 ATGGCTGCTTCTGCAAATTCTGAGCTACTCTTTCGGTACTCTAGAAGGTTACTGTTCCTTAACTCCAACCTCAACTCAACCAACCCACCATCACCATCATCTTCCAACAAAACCTCCGCAGATTCTTTGTTCCTCGGAGATGGTAACTTCGATGCGAATGTTATCATGGTACTGTCTGTTCTCTTGTGTGCTCTATTCTGTTCACTCGGTTTAAACTCCATCCTCAGATGTGCCCTAAGGTGTTCCAACGTCATCGTCCTCAATAACAACACTAACGACTCAATTCCGCCGCCACGAGTGGCCAACACCGGAGTGAAGAAGAAGGCTTTGAAGACTTTCCCTACGGTTACCTTCTCTTCTGAGTTGATAAAGCTCCCAGGTCTTGACACAGAGTGTGTGATTTGTCTCTCGGAGTTCAACAATGGCGATCGCCTTCGGATTCTTCCAAAGTGCAACCATGGATTCCATGTTCGTTGCATTGACAAATGGCTCAGCTCTCATTCTTCTTGCCCTAAGTGCAGACACTGCCTTATTCAGACATGTCAGAAGATCGTAGGGTCGACGACCACGACGACGTCGTCGTCTCAAACTTCTTCTGTCAATATTCCTCCTTCTGAAACTATAGTGAGAATCGCACCTTTAGAACCAGAGCGTATGAATCAAGGCGAACCAAATCCTCCTGAGAAAGGGAACGAAGTCCACTTGGGTTCCCATGAATGTGGCAACAGTAACCTAGTCATTTCCCACGCACTAGGCATAGCTACCACCATATCATATCCTCATCCAACCTCTCACATTCCCCCTATCATTCTGCTTTAA 819 0.4652 MAASANSELLFRYSRRLLFLNSNLNSTNPPSPSSSNKTSADSLFLGDGNFDANVIMVLSVLLCALFCSLGLNSILRCALRCSNVIVLNNNTNDSIPPPRVANTGVKKKALKTFPTVTFSSELIKLPGLDTECVICLSEFNNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCQKIVGSTTTTTSSSQTSSVNIPPSETIVRIAPLEPERMNQGEPNPPEKGNEVHLGSHECGNSNLVISHALGIATTISYPHPTSHIPPIILL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0525 272 CDD RING-H2_PA-TM-RING 131 174 - -
Lele23g0525 272 MobiDBLite consensus disorder prediction 215 235 - -
Lele23g0525 272 SMART ring_2 132 173 IPR001841 -
Lele23g0525 272 Pfam Ring finger domain 131 174 IPR001841 -
Lele23g0525 272 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lele23g0525 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 178 IPR013083 -
Lele23g0525 272 PANTHER RING-H2 FINGER PROTEIN ATL78 11 218 IPR044602 GO:0016567|GO:0016740
Lele23g0525 272 SUPERFAMILY RING/U-box 131 179 - -
Lele23g0525 272 FunFam RING-H2 finger protein ATL73 94 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0525 Lele-ChrLele23 3875047 3877879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0525 45 178 C3H Transcription Factor Family AT3G10910 48.201 1.53e-40 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1477 22 20537739 20538383 Lele23g0525 23 3875047 3877879 hybridization