Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0524 ATGTCTGCTTCTGCAAATTCTCGAGTACTCTTCCATGGCCTTCATCAATTCCAGTACTCTAGAAGGTTACTGTTCCTTAACTACTCCCCCCTCAACTCAACCAACAACAGCACCTCGACAGAGTCATCAATCCTCGGAGATGCTAACTTCAATGCGAATGTTATCATGGTACTGTGTATCATCTTGTGTGCTCTCATCTGTTCACTGGGTTTAAACTCCATCATCAGATGTATCTTAAAGTGTTCCAATATCGTCATCCCCAATACTAATAACGACTCATCAAACCCTACTCCGGCTCGAGCGGCCAACACCGGAGTGAAGAAGAAGGCATTGAAGACTTTCCCTACAGTGACCTTCTCTTTTGAGTCGTTGAAGCTCCCAGGTTTGGACACAGAGTGTGCGATATGTCTCTCGGAGTTCGACAATGGCGATCGCCTTCGGATTCTTCCAAAGTGCAACCATGGCTTCCATGTTCGTTGCATTGACAAGTGGCTCAGCTCGCATTCGTCCTGCCCTAAGTGCAGACACTGCCTTATTCATACGTCATGTCAGAAGAAGATCGCAAAGTCATCTTCTTCTGTTGCTCCTGCTGAAACTATTGTGAGCATCGCACCTTTAGAACCTGAGGCTATGGTGCGTAACTATAGCTAG 651 0.4639 MSASANSRVLFHGLHQFQYSRRLLFLNYSPLNSTNNSTSTESSILGDANFNANVIMVLCIILCALICSLGLNSIIRCILKCSNIVIPNTNNDSSNPTPARAANTGVKKKALKTFPTVTFSFESLKLPGLDTECAICLSEFDNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIHTSCQKKIAKSSSSVAPAETIVSIAPLEPEAMVRNYS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0524 216 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Lele23g0524 216 FunFam RING-H2 finger protein ATL73 93 180 - -
Lele23g0524 216 PANTHER RING-H2 FINGER PROTEIN ATL78 15 211 IPR044602 GO:0016567|GO:0016740
Lele23g0524 216 SUPERFAMILY RING/U-box 130 180 - -
Lele23g0524 216 Pfam Ring finger domain 132 175 IPR001841 -
Lele23g0524 216 CDD RING-H2_PA-TM-RING 132 175 - -
Lele23g0524 216 SMART ring_2 133 174 IPR001841 -
Lele23g0524 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0524 Lele-ChrLele23 3870210 3870860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0524 22 185 C3H Transcription Factor Family AT1G20823 45.238 2.99e-43 142