Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0514 ATGGCTCCGGCCAACTCCTCGGCGGCGGCTCAGAGGCTTATCGGCTTCAGCCGTCGTACACAAGCCCCGCGCCACTCGTCGCCGCCGGCCTCACCTCCGGTCAAGAAGTATAAGTCATTGGCCGAGATAATGGCCAAGGCACGATATGCTGTTGTTGAGAGGGATGATTACAGTGACGTGTTGTGTGACCAATGTGGCTCTGGTGAACGCCCGGACGAGCTGCTTCTGTGTGATAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCCATTGTTGTTAGAGTTCCTATTGGATCATGGCTCTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAAAAGTTTTTCTCAGAAGAAGGTAATTGATTTTTTCCGGATTCAGAAATGTGCTGATCTTAAAAACAAATGCTCTTCTCCCCAAGATGCCAAGAGGCGTAAAAGGCGTACATCATTGATATTGCACAAGAAACGAAGAAGACTATTGCCATTTATTCCTACAGAAAATCCTTCCTGGAGACTGAAACAGATGGGTTCTCTTGCTACTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAGGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGGGAATGCCCTCCCCTTATGGTTGTATATGATTCATGTGAAGGGTATACAGTTGAGGCTGATGGCCCAATCAAGGACATGACATTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAACATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTACTAAAAGTCTTGTAATCTGCCCTGATAAACGCGGAAACATTGCTCGCTTTATAAGTGGCATCAACAATCATACACTGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTCCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1122 0.451 MAPANSSAAAQRLIGFSRRTQAPRHSSPPASPPVKKYKSLAEIMAKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVKSFSQKKVIDFFRIQKCADLKNKCSSPQDAKRRKRRTSLILHKKRRRLLPFIPTENPSWRLKQMGSLATALTALHMEFSDDLTYSPEMAPRSANHADFENGGMQVLSREDIETLEHCRAMCRRGECPPLMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPTKSLVICPDKRGNIARFISGINNHTLEGRKKQNCKCVRYNVNGECRVFLVATRDIPKGERLYYDYNGYEHEYPTHHFV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0514 373 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Lele23g0514 373 Gene3D SET domain 145 373 IPR046341 -
Lele23g0514 373 Pfam PHD-finger 62 107 IPR019787 -
Lele23g0514 373 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Lele23g0514 373 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 371 - -
Lele23g0514 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 122 IPR013083 -
Lele23g0514 373 Pfam SET domain 279 361 IPR001214 GO:0005515
Lele23g0514 373 CDD SET_ATXR5_6-like 236 373 - -
Lele23g0514 373 SMART PHD_3 61 107 IPR001965 -
Lele23g0514 373 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Lele23g0514 373 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
Lele23g0514 373 SUPERFAMILY FYVE/PHD zinc finger 27 107 IPR011011 -
Lele23g0514 373 SUPERFAMILY SET domain 227 361 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0514 Lele-ChrLele23 3770979 3775016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0514 59 113 C2H2 Transcription Factor Family AT3G01460 39.286 4.61e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele23g0514 SET 1.6e-06 No_clan