Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0487 ATGGAATTGCTCGAACAGTACATGCTGTTCAGACAAGAAACAGAGAAAGAAAGCAAGAAAAACAGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTGTGTCAGCTTTCATCTGGTACACGAATGATAGGCAGGCAGCTATTCTTGCGGAGAACAAGAGTGTCTTGGAGGTTTCAAAGATTTCTGGTGAGGAGTGGAAAAGTATGACAGAAGAACAGAAGAGACCTTATGAAGAGATGGCAAAGGAGAATAAGGAGAGGGAGGATCACCAAATTCATGTTTCCAGTAACAAGAAACCTCTCCTCTTTTACATCAATCTTGCTAAGAAATTTCTAAACCAGTATAATGTCGTTGAGCTCTCTGCACTGGGCACAACCATTACAATGCTCATTATCATCTCTGAGAATTTGAAACGCAATCGCTTGGCTACTGAGAAAAGTGTCACAATATCTACTGTTCCCTCTAAGAGAGACACAATAGGCCGACAATTTCACAAGGCTAAGATTGAGATTCTGCTGGTAAAAGCTGGGCAAGTGGACCAAACTACTGGTGCTACAAGATCGAAAAGAGATGCTGACAACAAGGCCATAACAGAGTAG 600 0.4183 MELLEQYMLFRQETEKESKKNRKEKDPLKPKHPVSAFIWYTNDRQAAILAENKSVLEVSKISGEEWKSMTEEQKRPYEEMAKENKEREDHQIHVSSNKKPLLFYINLAKKFLNQYNVVELSALGTTITMLIIISENLKRNRLATEKSVTISTVPSKRDTIGRQFHKAKIEILLVKAGQVDQTTGATRSKRDADNKAITE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0487 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 99 IPR044601 GO:0003677
Lele23g0487 199 Gene3D - 92 198 IPR036882 GO:0003676
Lele23g0487 199 Pfam Alba 91 145 IPR002775 GO:0003676
Lele23g0487 199 SUPERFAMILY HMG-box 17 87 IPR036910 -
Lele23g0487 199 CDD HMGB-UBF_HMG-box 30 87 - -
Lele23g0487 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 30 98 IPR009071 -
Lele23g0487 199 Pfam HMG (high mobility group) box 30 88 IPR009071 -
Lele23g0487 199 Gene3D High mobility group box domain 16 91 IPR036910 -
Lele23g0487 199 SUPERFAMILY AlbA-like 92 178 IPR036882 GO:0003676
Lele23g0487 199 SMART hmgende2 29 99 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0487 Lele-ChrLele23 3573596 3574439 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele23g0487 Alba 1.8e-07 CL0441