Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0486 ATGATATTTGATTGCCACATGAGCTCAATGAAGGCACTTCCAGATCAGAGCTTCTATGATTCCGATGCATCAAAATCATCACCTTGTATTATTGAAGCTGAAATTGAGAGTTTTGAGTTTCCATTTATGTCTTGTGAAGATTGGTACTGTAGATGCGAATGCTCGACTGTCATTGACAATAAAAAATACTGTGAATTAAATTTACTAGGCGATTACTGATACTCAATACCCAGTGATGAGGCTGAAGGATTTACGTACTTCTTTAGGGTTTCAAAGAAGACTTTTGAGTACATACGTTCCCTTGTAAGGGAGGATCTCATATCAAGGGCACCATCTGGGCTCATCAACATCGAGGGAAGGCTTCTTAGCGTCGAGAAGAAGGTTGCGATTGCCATCAGAAGACTAGCATCCGGTGAATCTCAAGTTTCAGTTGGAGCTTCCTTTGGGGTTGGGCAGTCCACAGTTTCTCAGGTAACTTGGAGATTCATCGAGGCAATGGAAGAACGCGCTAGACATCATCTCAAGTGGCCAGATTTGAATAGAATGGAAGACATCAAGTCCAAGTTCGAATCATCCTACGGGTTTTATTTGCCTGGAGGCGTGCCGTTTTCCCGGCTATTGAAATGTTTAGGATTCTTCAGACTCCGCGAGAATGGGGAGCGATTAAATGGAAAGGCAATAACCTCAACTGGAGGAGACACGATAAGAGAGAAGAATTTGTTATTGTATTTCTGGAGAAGTAAGAATCGTGCTTATTTCAGGAAGTGTGTTCTTTCTGGCTGTTTCGTAAGAATCAGAAGGGTAACAAGAGATGCAACTCAAAATGCATTGGAGCACCCATATTCAGCGGCAGTTAGGAGTGATTCCTTTATACCTTCTAAAGAGCAACTAAGTGATGCGCGATTGATATATTCCGTTGCTCCAGCCATGGGCCACAACAAGGAATCTCATCCTGAATCACATTTAAGGGTTCCTGCAATTGTGAATGCTCTTGAAGAAATGAAGCTCCCTTCAAAGTTTCGGGGTTCTGAGATCATTGAACTTCAACACTTTGAGCCTGCCTCAGTAGATGTCGTTGCAAGTGTTCATGCAAGAGCCTATGTATCTGGCCTTGAGAAGAGGACACATCTATCCTGCATGGAGTACTGTGATGTGTTCATCTGCTCGTTCTCTGATGCTGGTGCTAATAATGCAGACATTCCAGGAGTCATTAGTCGCTGCTGGAGCCTGATTAGCCTTAATCGACTCAGTGGTGACGTCTCCACCTGGCATGACCATCTATTAGTGATAATCTCTTCGAAGAACAGCCGAGATCCACGCACTGGTTTTGCTTTGATAAGACCGCCTGGACATCATGTTGTTCCACAATGGCCTATGGGCTTCTGTGTTTTTGGAAATGTGGTCATTGCTGCTCGTTATGCCCAACATGTGCATGGACTAAGGCGCATGTTTATAATTGATTTTTATGTCCACCATGGGAATGGAACAAATGATGCTTTCTACGATGATCCAGATATATTTTTCCTCTCAACTCACCAAGCTGGAAGCTACCCTGGTACGGGTAAGTTTGATGAGGTGGGAGCTGGAGATGGAGAAGGAACCACATTAAACCTGCCTCTACCAGGAGAGGATCAGGTAATCAAACAGCGTGGAAAGAAATCTTGCAGTGGGGTCTTTAATCTCAGTGGAAGACAGCCTATGGAGGTGCCTGGGAAAGCGTTGTCAAGTGGAAACCAATTCTATTTCTTCAGCAAGTATAAGAAAAAGAGAGTGACAGAAAGTGGGTATTGGAAGGAAATAGGTGCGACTGAGTCAGTAGTCTCTGCTGCAGGCAACAAAGTTGGGATCAAGAAATATTTAGTATTCAACAATGGAGAAGAAGCTCCTCATGGTTCTGAAACCAGCTGGGTTATGCAAGAGTATCATCTTCCCTCTTCTGGGTTTAACAATACTCGAGGAACCCTAGAACCTGATAAAAGTAAATGGGTGCTGTGCCGAGTCTATGAAAAGAAGAGAGATTCTGAACATGATGATGAAGGTGGAAGTACAGAGCTTTCATGGATGGATCAAATGTATATGTCAACGTTGGATGATGATGAAGATGAGGATGGGGAAATTAGCTTTCCCTAA 2130 0.4343 MIFDCHMSSMKALPDQSFYDSDASKSSPCIIEAEIESFEFPFMSCEDWYCRCECSTVIDNKKYCELNLLGDYXYSIPSDEAEGFTYFFRVSKKTFEYIRSLVREDLISRAPSGLINIEGRLLSVEKKVAIAIRRLASGESQVSVGASFGVGQSTVSQVTWRFIEAMEERARHHLKWPDLNRMEDIKSKFESSYGFYLPGGVPFSRLLKCLGFFRLRENGERLNGKAITSTGGDTIREKNLLLYFWRSKNRAYFRKCVLSGCFVRIRRVTRDATQNALEHPYSAAVRSDSFIPSKEQLSDARLIYSVAPAMGHNKESHPESHLRVPAIVNALEEMKLPSKFRGSEIIELQHFEPASVDVVASVHARAYVSGLEKRTHLSCMEYCDVFICSFSDAGANNADIPGVISRCWSLISLNRLSGDVSTWHDHLLVIISSKNSRDPRTGFALIRPPGHHVVPQWPMGFCVFGNVVIAARYAQHVHGLRRMFIIDFYVHHGNGTNDAFYDDPDIFFLSTHQAGSYPGTGKFDEVGAGDGEGTTLNLPLPGEDQVIKQRGKKSCSGVFNLSGRQPMEVPGKALSSGNQFYFFSKYKKKRVTESGYWKEIGATESVVSAAGNKVGIKKYLVFNNGEEAPHGSETSWVMQEYHLPSSGFNNTRGTLEPDKSKWVLCRVYEKKRDSEHDDEGGSTELSWMDQMYMSTLDDDEDEDGEISFP 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0486 709 PRINTS Histone deacetylase superfamily signature 482 497 IPR000286 -
Lele23g0486 709 PRINTS Histone deacetylase superfamily signature 448 471 IPR000286 -
Lele23g0486 709 MobiDBLite consensus disorder prediction 694 709 - -
Lele23g0486 709 PANTHER HISTONE DEACETYLASE 9-RELATED 437 543 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Lele23g0486 709 MobiDBLite consensus disorder prediction 673 709 - -
Lele23g0486 709 Pfam Histone deacetylase domain 317 542 IPR023801 -
Lele23g0486 709 Gene3D Histone deacetylase domain 294 545 IPR037138 -
Lele23g0486 709 ProSiteProfiles NAC domain profile. 520 670 IPR003441 GO:0003677|GO:0006355
Lele23g0486 709 Pfam No apical meristem (NAM) protein 559 643 IPR003441 GO:0003677|GO:0006355
Lele23g0486 709 SUPERFAMILY Arginase/deacetylase 313 541 IPR023696 -
Lele23g0486 709 CDD HDAC_classII 317 542 - -
Lele23g0486 709 Gene3D NAC domain 546 675 IPR036093 GO:0003677|GO:0006355
Lele23g0486 709 SUPERFAMILY NAC domain 560 670 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0486 Lele-ChrLele23 3559785 3570782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0486 566 679 NAC Transcription Factor Family AT3G15510 38.636 7.21e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele23g0486 Hist_deacetyl 3.2e-43 CL0302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1526 21 23485092 23490379 Lele23g0486 23 3559785 3570782 hybridization
Lele22g1513 22 20818037 20826136 Lele23g0486 23 3559785 3570782 hybridization