Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0474 ATGAGTCAAGATTCGGTTCAATTGGATCATTTTGCCTCTGACAGAGACAGTTCTGTAACATTCAATGGCCCAGATTGTACATTCAAGTTGCAAGGCGAAATTGCAACTAAGTTGCTAAAAAATCAGCGGGATGGCTTGAAGTGGCTCTGGTTTTTGCATTGCCAGGGAAAAGGTGGAATCCTGGCAGATGACACGGATTTGGGAAAAACAATGCCGATTTGTAGTTTTCCAGCTGGTTTATTCAACTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCTTACTTCCCCATTGGGTCAATGAACTATCTGCTGTTGGTCTTTCTGAGAAGACAAGAGAATATCATGGAACTTGGAAAAAAGCCCGAGAGGAAGGACTTTACTGCATACATCAGGATGGAGGTGTTCTCGTCACAACATATGGCGTCATTGTTCGTGACTATTCCAAGTTATTCAGAGAGCACAGGCACTTACGATCTTATGATAAGAAAATCCAAGACAGCCCCACATGGGATTATGTGATACGTGATGAGGTTGGTTCTGACATTTGA 558 0.4283 MSQDSVQLDHFASDRDSSVTFNGPDCTFKLQGEIATKLLKNQRDGLKWLWFLHCQGKGGILADDTDLGKTMPICSFPAGLFNSRLIKRALVVAPKTLLPHWVNELSAVGLSEKTREYHGTWKKAREEGLYCIHQDGGVLVTTYGVIVRDYSKLFREHRHLRSYDKKIQDSPTWDYVIRDEVGSDI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0474 185 Gene3D - 21 182 IPR038718 -
Lele23g0474 185 PANTHER SNF2/RAD54 FAMILY MEMBER 18 181 - -
Lele23g0474 185 Pfam SNF2-related domain 56 180 IPR000330 GO:0005524|GO:0140658
Lele23g0474 185 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 185 IPR014001 -
Lele23g0474 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0474 Lele-ChrLele23 3471498 3473170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0474 38 152 RAD5 or RAD16-like Gene Family AT1G02670 28.346 3.22e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele23g0474 SNF2_N 2.4e-12 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1522 22 20896310 20905252 Lele23g0474 23 3471498 3473170 hybridization