Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0383 ATGTTCCCAATCTACTCTGATCGTTCTCAGCAAGATATGTCCGCCATGGTTTCTGCTCTTGCTCAGGTCATTGGGGCTTCCCCTAATGTTTATGATCAGAACCATTTATCTGATCATTTGTCTCAGTCCTCTTCTGGAACTAACTCTGAGCAATGTGTTCAAGCACTTCAACATCATCAAGGGAGCACAGGGAAGAGACACTACAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCGGCTGAGATTCGTGATCCCAAGAAAGCCGCCAGAGTTTGGCTCGGAACCTTCGACACGGCGGAGGCGGCCGCCCTTGCTTATGACGAAGCCGCTCTCAAATTCAAAGGGAGCAAAGCTAAGCTCAACTTCCCTGAAAGAGTTCAACTTCAACCACCACCTTCCATGATGACGACGAACACGACGTCGTTTCCTTCTTCTTCAGGTGAATTTTCTTTCCTCACAAACCCTCATCATCAACAACCACAACCGCCACTTGTTCTTGCTCCTGCGACGACACCATTCTCTTCACAACAACCTTATCATTATAATAATTACCAATATAATCCACATCTTCTGGGAAGTGATGGTGGCGGCGGTCACAATTTGTTTAATTATTCTCCTCAACAACCACCACCACCTTATACGTCTGTGTCTTCGTCCTCGTCTTCCTCGTATGTAATGTCTCACCAGCAACATGAACAAGAACAACTTCTACAGTTTTCCATGCAGTTTGGAGCTCCCTCGTCTTCTTCTCATCCTCCTCCTTCCAATTGGCCATTTCATGAATTTGATGGTCAACGACGTTGA 807 0.4672 MFPIYSDRSQQDMSAMVSALAQVIGASPNVYDQNHLSDHLSQSSSGTNSEQCVQALQHHQGSTGKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALKFKGSKAKLNFPERVQLQPPPSMMTTNTTSFPSSSGEFSFLTNPHHQQPQPPLVLAPATTPFSSQQPYHYNNYQYNPHLLGSDGGGGHNLFNYSPQQPPPPYTSVSSSSSSSYVMSHQQHEQEQLLQFSMQFGAPSSSSHPPPSNWPFHEFDGQRR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0383 268 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Lele23g0383 268 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Lele23g0383 268 MobiDBLite consensus disorder prediction 34 71 - -
Lele23g0383 268 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Lele23g0383 268 MobiDBLite consensus disorder prediction 34 61 - -
Lele23g0383 268 MobiDBLite consensus disorder prediction 128 149 - -
Lele23g0383 268 MobiDBLite consensus disorder prediction 131 149 - -
Lele23g0383 268 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Lele23g0383 268 MobiDBLite consensus disorder prediction 215 251 - -
Lele23g0383 268 MobiDBLite consensus disorder prediction 198 268 - -
Lele23g0383 268 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Lele23g0383 268 Pfam AP2 domain 67 116 IPR001471 GO:0003700|GO:0006355
Lele23g0383 268 PANTHER DNA-BINDING DOMAIN 37 229 IPR044808 GO:0003700|GO:0009873
Lele23g0383 268 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Lele23g0383 268 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
Lele23g0383 268 SUPERFAMILY DNA-binding domain 67 125 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0383 Lele-ChrLele23 2773051 2774713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0383 1 139 AP2-EREBP Transcription Factor Family AT5G61890 60.993 5.65e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele23g0383 AP2 3.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0383 23 2773051 2774713 Lele23g0383 23 2773051 2774713 ECH
Lele23g0383 23 2773051 2774713 Lele05g0636 05 3743641 3744918 ECH
Lele23g0383 23 2773051 2774713 Lele06g0456 06 2798782 2800662 ECH
Lele23g0383 23 2773051 2774713 Lele07g0667 07 3802791 3804717 ECH
Lele23g0383 23 2773051 2774713 Lele08g0469 08 2873322 2874606 ECH
Lele21g1628 21 24240294 24243413 Lele23g0383 23 2773051 2774713 hybridization
Lele22g1611 22 21628301 21644118 Lele23g0383 23 2773051 2774713 hybridization