Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0379 ATGCCTTTTGAAATAATGGATCAGAGGGCTGTATCTGCCTCATCACACTTTTTTGATGACATTTCCTTTTGCTCTGAGAAGAATGCCGGATTGCAGAGGCCAAGATCTATTCATGATCACTACCATCAAGGAAAGAATGGAATGGCAGCACCACCTAGCAGCATTTTGAATGCTTTGTCACCTCGGGAAATTGGTGCAAAGACTGGCTGGTCAAAGTCACCAACAGGTCTGTCTGGAGTAACCGTAGAAAAGCTACATGCTGGTGATGAAGGCAATGTTGATATGTTTAAAGCCTCCAAGGAAGCATTGAATCATCATCCCAGATCTCAGTCTAATGTGCGTACTCAGCCAGTGTCTAAACCATATGGTTTGATTGGCAACAAGATCATCACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTATCCGAGATATTTACCCGGAAACTGAGGTTAGCGGAAAATGATGTTCTGCCTCAACAGCCTGTTACTGTTGGTTCCCTTGAGGAGGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCATTGATGACTTAGGATTCAATACTCTTGCCGTAACTGGTGATGACGTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTAGAAGGTGATGGGCATCTAACTTCAGGAAAAAGGACCAGCAGTCCAGATGGAGATCCTGGTTTCTTTGGAGGCTTCAAAGGGAAACTTCCTTTTGGTGAACACCCTTCTAGAACTCTTTTTGTTAGAAACATCAACAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGTGATGTCCGAACCACTTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGGTCATTGAGGTCTAGGAAACTCGACATACATTATTCAATACCAAAGGTAAATGCTCCAGAGAAGGATATTAGCCATGGCACATTGCTTCTATCTGGTCTTGATTCTTCTGTTTCACATGATGAACTTATACACTTTTTTGGATTTTATGGAGAAATCAAAGAAATTTATGAATCTCCAGAAATGAATTACGACAAATTTATAGAGTTCTATGATGTGAGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAACAAGAGTGAAATTGCTGGGAAGCAGATCAAGCTTGAACCCAGCCATCCTAAGAGTTCAAGTGCAACATGTTTGATGCCGCAGTCTCAGAAGGGAGAGAAGGAGTCTGATCTTAGTCAGACTATGGGTGACAACTTATCATTAAGCCAGAATGCAATAACGTCTTCTGGAGTAATTGCATCTGGCTGCTTGGACAATGGATCTGATCATGGATTTCCAGCAGCTATACGACAAACTGTGGATGCCTTGTCCATGAATGTATTGTCACATGTGAATTCTGGCATTCACAACACAGTGAGAGGGCCATCAATTCCTGGATTCCATCCTCATTCCCTCCCCGAGTATCATGATGGTTTAACTTGTGGCAGTCCTTACAACTTTTCAAGAACCTTTAGCAATGTATCTGGTAATATGGGTCCAAGAGTGACAGATAGCTCTGACAGCAGGCACACTCTGGGATTTGGTTCAACTGGGAAATTGATGGACTTTAATGGAGGAGGAAATGGGAGCCGTCCTAATCCTGTTGGGCTTTATCACATGTGGAGTGGATCGAATTTGCACCAGCAAACTCCACCAGGTCCAATGGTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGCTCTCCTTGTCTTCAACCGATGCCTGGCTTTCCCAGATCATCATCTCATATGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCCCCATGGGACAGACAACATTCTTATTTGGCAGAGTCCCCTGACTCCTCTGGTTTTCACATGGGTTCTCTTGGTAGTACAGGTTTTCCTGGTACATGGCAATTGCATCCTCCAGAATTTTCTTCTCACAAAATGTTTCCTCATGTTGGTGGGAATGGCATGGATTTGTCTCCCAATGCTGGGCAGAGCTCCCCAAGTCAGTTTTCACATGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATTCTACCAATGACAGAATGAGAAACCTCTATCACCGTAGAAGTGATGCTAATACTAACAATGCTGACAAAAAGCAATTTGAACTTGACTTAAGTCGCTTATTGAATGGAGAAGACACACGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTCTTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCACTTGCCTATGCTCGAATTCAGGGAAAAATTGCTCTTATTGCACATTTCCAGAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGAGGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCTATGGGTACCAATATTAGATTGAGGCCTGGAAAATCACGTGCTAGGAGCCCATCGGCTTCGACTAGTGGGGAGGAGTCTTCCAATGGATAA 2799 0.4259 MPFEIMDQRAVSASSHFFDDISFCSEKNAGLQRPRSIHDHYHQGKNGMAAPPSSILNALSPREIGAKTGWSKSPTGLSGVTVEKLHAGDEGNVDMFKASKEALNHHPRSQSNVRTQPVSKPYGLIGNKIITNAASRESSLFSSSLSEIFTRKLRLAENDVLPQQPVTVGSLEEEPYKSLEEIEADTIGNLLPDEDDLFSGVIDDLGFNTLAVTGDDVEDFDLFSSGGGMELEGDGHLTSGKRTSSPDGDPGFFGGFKGKLPFGEHPSRTLFVRNINSNVEDSELKALFEQYGDVRTTYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPEKDISHGTLLLSGLDSSVSHDELIHFFGFYGEIKEIYESPEMNYDKFIEFYDVRAAEAALRALNKSEIAGKQIKLEPSHPKSSSATCLMPQSQKGEKESDLSQTMGDNLSLSQNAITSSGVIASGCLDNGSDHGFPAAIRQTVDALSMNVLSHVNSGIHNTVRGPSIPGFHPHSLPEYHDGLTCGSPYNFSRTFSNVSGNMGPRVTDSSDSRHTLGFGSTGKLMDFNGGGNGSRPNPVGLYHMWSGSNLHQQTPPGPMVWQKTPSFVNGACSPCLQPMPGFPRSSSHMLRASHIDHHVGSAPVVTASPWDRQHSYLAESPDSSGFHMGSLGSTGFPGTWQLHPPEFSSHKMFPHVGGNGMDLSPNAGQSSPSQFSHVFPGRHPMTSMSKFDSTNDRMRNLYHRRSDANTNNADKKQFELDLSRLLNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKIALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRLRPGKSRARSPSASTSGEESSNG 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0379 932 Gene3D - 351 449 IPR012677 -
Lele23g0379 932 SUPERFAMILY RNA-binding domain, RBD 779 863 IPR035979 GO:0003676
Lele23g0379 932 FunFam Protein MEI2-like 1 352 448 - -
Lele23g0379 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Lele23g0379 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 420 IPR000504 GO:0003723
Lele23g0379 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Lele23g0379 932 Gene3D - 262 350 IPR012677 -
Lele23g0379 932 SUPERFAMILY RNA-binding domain, RBD 265 428 IPR035979 GO:0003676
Lele23g0379 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Lele23g0379 932 CDD RRM3_MEI2_like 780 865 IPR034454 -
Lele23g0379 932 MobiDBLite consensus disorder prediction 891 932 - -
Lele23g0379 932 MobiDBLite consensus disorder prediction 917 932 - -
Lele23g0379 932 Pfam RNA recognition motif 2 777 873 IPR007201 -
Lele23g0379 932 MobiDBLite consensus disorder prediction 423 451 - -
Lele23g0379 932 FunFam MEI2-like protein 5 isoform 2 257 351 - -
Lele23g0379 932 MobiDBLite consensus disorder prediction 420 451 - -
Lele23g0379 932 PANTHER RNA RECOGNITION MOTIF-CONTAINING 112 923 - -
Lele23g0379 932 CDD RRM1_MEI2_like 267 342 IPR034453 -
Lele23g0379 932 SMART rrm1_1 779 855 IPR000504 GO:0003723
Lele23g0379 932 SMART rrm1_1 354 422 IPR000504 GO:0003723
Lele23g0379 932 SMART rrm1_1 269 337 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0379 Lele-ChrLele23 2737531 2743530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0379 263 427 Eukaryotic Initiation Factors Gene Family AT3G16380 24.731 1.09e-06 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1632 21 24266344 24272394 Lele23g0379 23 2737531 2743530 hybridization
Lele22g1614 22 21655241 21661008 Lele23g0379 23 2737531 2743530 hybridization