Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0378 ATGGCGGGTGAGAGGTTTCGTATTTCGAGGGACAGCCATGAAAAATCGCTACAGACAGCGATTCCTTCCCCTTCCAAAGTACCACGATCAACACGAAGAGGATTGATTATTCTCCATCTTTTATTCTGGACAATGCAAATTGATAATCTTGATGATTCGCCGTTGTTCCGCCAACAGATCCAAAACTTGGAAGAAGGTGCTGAGTTATTAAGATCCAGATGCTGGAAGTTCTACAAAGGATGCCGAAAGTACACGGAGGGGCTTGAAGGGGAATATGATGGGGACAACGCATTTGCAAATGCCCTTGAAACATTTGGAGGAGGGCCTAGTGATCCTTTTTTTGATGTTGTGGGAGGATCTGTAATGACGAAATTCACTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTGCTCCGGTCACAGGTGGAGCACATGCTGAATGACCGATTACTACACGTTCTCAATGTTGACATCCTTGATGCCAAGGAAGCTCGAAAACGTTTTGACAAAGCCTCCGTTCAGTATGAACAGGCACGTGATAAATTTACGTCTTTGAGGAAAAGCGCCAAGTTGGATACCGTCGCTGCCGTAGAAGAGGAAATGCACAATGCAAGGGACTCATTTGAGGAAGCCCGTTTCAACCTGGTTGGTGCTCTCAACCATATTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTTCCTGGAATTATGGATGCTCATCTTCGATATTTTCAACAGGGATATCAACTATTCCAACAGATGGAACCTTTCATCAGCGAGGTTCTGAGTATTGCACAAAAGTCGAGAGAAAATTACAATACGGAGCAGATTTCCCTTCTTGAAAGAATTCAAGATTACAAAAAACAAGTTCATCAAGATAGTAAGCTCAACTCGAATGGTCCTTCTCCTAATAGAGACATGCAGGCTTTTGCTAGGATACCGAATGATGTGGCCGATGCTGTAATGGAATCTGCTGCAAATGGAAAAGTTCAAATACTTAGACAAGGATATCTGTCAAAGCGATCTTCCAATCTGAGAGGGGCATGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTATACTACCATCGCAAACCAGGGAACTGGTTGCAAGCGCACGGCGGCGGCCAACCATCTGCAGCAAAGAATAATCCCACTGAACCTGGTACTGGGCTTTTGAGCCGTCTTGCTTATCACCATGCTGTTGTCGATGAAAAAACCGCAGCACGTCGTGCGGTGAACTTGCTAACATCAACAATCAAGATTGATGCTGAGCAGACGGATTTAAGATTTTGCTTCAGAATTATTTCACCAACAAAGAACTTCACACTGCAAGCAGAAAATACGCCGGACCAAATGGATTGGGTTGAAAAGATAACAGGAGTAATTGCCTCCTTGTTGAATGCCCAAACAATAGAAATGCCTCCCTCAGTTAACTCTGAATGCAATGATGGTAACCCTGCCAGTAAGACTAATACGTCGGACAATCTCCCAGTTGATGATCAGGTAGTGTCTAAAGCATCTAAAACTTTGCAATCGCATCAACAGGTTGTAAAAAGTGAAAAGCCAATTGACGTTCTTAGAAAGGTGTGCGGCAATGACAAGTGCGCTGATTGTGGTAAACCTGATCCGGACTGGGCATCCTTAAACCTGGGTATTCTTATATGCATAGAATGTTCTGGTGTGCATCGTAATCTTGGTGTACATATATCTAAAGTAAGATCGTTGACACTAGATGTGAAAGTCTGGGACGCTTTTGTTTTGGGCATGTTTCAGTCGCTGGGTAATCTCTTTGCAAACTCAATATGGGAAGAGCTGTTGCATTCACCAAGTAATTCTCAATCAGATGATATGCCTGTTTCTTCATTTAAGGTCAAAACTAAATTATTTCATGCAAAGAAACCAGAACAAGATGATCCTATTTCATTGAAGGAGAGGTTCATTCACGCAAAGTATTTGGAGAAGGTCTTTGTTAATCGGAAGAAGAAAACCGAACGTATCCGATCACTGGCTCACCAGGTGTGGGAAAGCATCTGTGCCAACGACAAGAGAGGAGTGTACCGACATATAGTCAAGTCAGATGTGGATCTCAATACCATCTCTGAGGGATTATCATATGGTGTGCCTACTTCTTGTCTCTCAACTCCATTAACAGGTAATTCTGAGGCGGTGCCGTCTTCAAGTAATATAGACAACTCATCAAGAAAAAATACAGACTCGTCATCAAAAAAGGAAATTCAGCCGACCGAGTTGCGACCCAGAAAAGCAGAAAATGAGCAGGTAGAGGATAGACAAGATTGTTCTAGTTCTAGTGTGCTTCATCAGGCATGTCTAACTGCCGATTCCAGCATGGTGGAGCTCCTTCTCCAGTATGGTGCAGATATAAATGCTCCAGATTCAAGAGGTCAGACACCACTGCATTGTTGTATAATCAATGGCAAGAGGGCAGCTGCAAAACTGCTTGTAATAAGAGGGGCCAATCCTCACGCTGCAGATAAAGAAGGCAATACACCTATTGAGCTTGCTTCGAGATCCGATTCTATCGGAAGAGATGTTTTCTCTCTCTTAACCAGCAAATAG 2592 0.4317 MAGERFRISRDSHEKSLQTAIPSPSKVPRSTRRGLIILHLLFWTMQIDNLDDSPLFRQQIQNLEEGAELLRSRCWKFYKGCRKYTEGLEGEYDGDNAFANALETFGGGPSDPFFDVVGGSVMTKFTIALREISTYKELLRSQVEHMLNDRLLHVLNVDILDAKEARKRFDKASVQYEQARDKFTSLRKSAKLDTVAAVEEEMHNARDSFEEARFNLVGALNHIEAKKRFEFLEAVPGIMDAHLRYFQQGYQLFQQMEPFISEVLSIAQKSRENYNTEQISLLERIQDYKKQVHQDSKLNSNGPSPNRDMQAFARIPNDVADAVMESAANGKVQILRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYHRKPGNWLQAHGGGQPSAAKNNPTEPGTGLLSRLAYHHAVVDEKTAARRAVNLLTSTIKIDAEQTDLRFCFRIISPTKNFTLQAENTPDQMDWVEKITGVIASLLNAQTIEMPPSVNSECNDGNPASKTNTSDNLPVDDQVVSKASKTLQSHQQVVKSEKPIDVLRKVCGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDAFVLGMFQSLGNLFANSIWEELLHSPSNSQSDDMPVSSFKVKTKLFHAKKPEQDDPISLKERFIHAKYLEKVFVNRKKKTERIRSLAHQVWESICANDKRGVYRHIVKSDVDLNTISEGLSYGVPTSCLSTPLTGNSEAVPSSSNIDNSSRKNTDSSSKKEIQPTELRPRKAENEQVEDRQDCSSSSVLHQACLTADSSMVELLLQYGADINAPDSRGQTPLHCCIINGKRAAAKLLVIRGANPHAADKEGNTPIELASRSDSIGRDVFSLLTSK 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0378 863 Coils Coil 271 291 - -
Lele23g0378 863 Gene3D - 326 480 IPR011993 -
Lele23g0378 863 Coils Coil 162 182 - -
Lele23g0378 863 SUPERFAMILY BAR/IMD domain-like 48 356 IPR027267 -
Lele23g0378 863 ProSiteProfiles ARF GTPase-activating proteins domain profile. 525 669 IPR001164 GO:0005096
Lele23g0378 863 CDD PH_ACAP 336 472 - -
Lele23g0378 863 PANTHER CENTAURIN/ARF 48 861 IPR045258 GO:0005096
Lele23g0378 863 PRINTS HIV Rev interacting protein signature 537 556 IPR001164 GO:0005096
Lele23g0378 863 PRINTS HIV Rev interacting protein signature 556 573 IPR001164 GO:0005096
Lele23g0378 863 SUPERFAMILY ArfGap/RecO-like zinc finger 525 664 IPR037278 -
Lele23g0378 863 MobiDBLite consensus disorder prediction 721 771 - -
Lele23g0378 863 Pfam Ankyrin repeats (3 copies) 777 860 IPR002110 GO:0005515
Lele23g0378 863 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 507 670 - -
Lele23g0378 863 Gene3D Arf GTPase activating protein 505 671 IPR038508 -
Lele23g0378 863 SUPERFAMILY PH domain-like 334 486 - -
Lele23g0378 863 CDD ArfGap 528 656 - -
Lele23g0378 863 Coils Coil 195 215 - -
Lele23g0378 863 CDD BAR_SFC_plant 59 259 IPR035670 -
Lele23g0378 863 SMART PH_update 334 470 IPR001849 -
Lele23g0378 863 MobiDBLite consensus disorder prediction 1 28 - -
Lele23g0378 863 MobiDBLite consensus disorder prediction 741 768 - -
Lele23g0378 863 Pfam BAR domain of APPL family 48 276 - -
Lele23g0378 863 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Lele23g0378 863 ProSiteProfiles Ankyrin repeat region circular profile. 772 803 - -
Lele23g0378 863 Pfam Putative GTPase activating protein for Arf 528 664 IPR001164 GO:0005096
Lele23g0378 863 MobiDBLite consensus disorder prediction 721 740 - -
Lele23g0378 863 Gene3D - 739 854 IPR036770 -
Lele23g0378 863 SUPERFAMILY Ankyrin repeat 768 852 IPR036770 -
Lele23g0378 863 Gene3D Arfaptin homology (AH) domain/BAR domain 47 294 IPR027267 -
Lele23g0378 863 SMART ANK_2a 772 801 IPR002110 GO:0005515
Lele23g0378 863 SMART ANK_2a 805 834 IPR002110 GO:0005515
Lele23g0378 863 ProSiteProfiles Ankyrin repeat profile. 805 837 IPR002110 GO:0005515
Lele23g0378 863 ProSiteProfiles PH domain profile. 333 468 IPR001849 -
Lele23g0378 863 SMART 5bar 49 262 IPR004148 GO:0005515|GO:0005737
Lele23g0378 863 ProSiteProfiles Ankyrin repeat region circular profile. 805 837 - -
Lele23g0378 863 Pfam PH domain 335 467 IPR001849 -
Lele23g0378 863 SMART arf_gap_3 525 669 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0378 Lele-ChrLele23 2712796 2722652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0378 537 672 C2H2 Transcription Factor Family AT4G21160 39.416 2.34e-20 91.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1616 22 21680501 21692770 Lele23g0378 23 2712796 2722652 hybridization