Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0374 ATGATTTCTGGAGCAAGCGGCGTCGCTTGGATGGACGAAAACAGGGAAGGAGACGACTCTGCTGCTCCTTCTTCATGGGCCAACGTGAACGCCAACATCAGCATCAACAAAAACCAAAACCAGAGCCATTCTGGTTTTGTTCAGAACAAGAACGAGATGGGTTCTCTGTGTGCTCTCAAACCCATGCTTGAAATCGATGACGATTGGTACATCGCGAACAATGGTATCCAAAATCAATCAGATATTATCAGAGGCATCACTTTCTCTCATAGCTTCGGTGACCAAGATGTTTTATTGCTGAACCCAGTAGATTCGTCCCATTCATGTTCCCCATCTACCACCGTCTTCAACAATCTCGACCCATCTCAGGTTTCGTACTTTCTTCCTCCGAAACCCACCTTATCGTCTCTTCTTAATGTCGTCCCCAGTAACAATCCTTTAGACCATGGTTTTGATGTGGGTTGCGATGTCGGGTTTCTTGAGGCTCAAGCTTCCGGCTCTAGCCCTCTGCGAGGCTTCAACGATTTCAGCTCAAATAACAACCAGATAAACCTTCCTAATTTATGCTCCAACCCACAACTCCCAACGTCAGGTAGAGTGGCTTTCAGAAAGAAGCTGGCCAGTAACGATACTCAGAAAGATGGAGGAAAGAGTGAGATCGGAGGGGGCAACGAGAAGAAGAGGAAGATGGGTAATTGGGAAGAGGTGAAAGACGCTAGCTTTGATGGGTCGGGGTTGAACTACGATTCCGATGAGTTGACGGAGAATACGAGGACCGAGGAGAACGGCAAGAACGGAGGAAACAGCTCGAATGTGAACAGTGCGGTGACTGGTGGTGGTGATGCCGGCGATAAGAAGGGGAAGAAGAAGGGATTGCCGGCGAAGAATTTGATGGCTGAACGACGTCGTCGGAAGAAGCTCAATGATAGACTCTATATGTTGAGGTCCGTTGTTCCAAAGATTAGCAAGATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTACCTTAAAGAACTCATACAAAAGATCAATGACCTCAATGTTGAATTGGAGTCAACACCTCCTGGCTCTTCACTGAGTACTCCTTCCCCGAGCTTTCATCCTCTGACACCGACTCCGCCAACATTGCCCAGCCATATGAAGGATGAACTTTGCCCTAGCTCATTGCCAAGCCCTAATGGCCAGCCTGCGAGGGTACCACCATGGTATGATATGCGAACAAAAATCGATATTCAACACCTAAAGATTGAGGTTCGGATGCGCGAAGGAAAAGCAGTGAATATCCACATGTTTTGTGGTCGCAAGCCCGGTCTCTTGCTTTCAGCAATGAAGGCTTTGGACAACCTCGGGTTAGAGATCCATCAAGCTGTTATTAGCTGTTTTAATGGATTTGCCATGGATGTCTTTCGAGCTGAGCAATGGAAGGAAGGTCAAGATGTTCCTCGTCCGGAGCAAATCAAAGCAGTACTGTTGGAGTCAGCTGGCTACCATGTCTCGAACTAG 1506 0.4774 MISGASGVAWMDENREGDDSAAPSSWANVNANISINKNQNQSHSGFVQNKNEMGSLCALKPMLEIDDDWYIANNGIQNQSDIIRGITFSHSFGDQDVLLLNPVDSSHSCSPSTTVFNNLDPSQVSYFLPPKPTLSSLLNVVPSNNPLDHGFDVGCDVGFLEAQASGSSPLRGFNDFSSNNNQINLPNLCSNPQLPTSGRVAFRKKLASNDTQKDGGKSEIGGGNEKKRKMGNWEEVKDASFDGSGLNYDSDELTENTRTEENGKNGGNSSNVNSAVTGGGDAGDKKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELIQKINDLNVELESTPPGSSLSTPSPSFHPLTPTPPTLPSHMKDELCPSSLPSPNGQPARVPPWYDMRTKIDIQHLKIEVRMREGKAVNIHMFCGRKPGLLLSAMKALDNLGLEIHQAVISCFNGFAMDVFRAEQWKEGQDVPRPEQIKAVLLESAGYHVSN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0374 501 MobiDBLite consensus disorder prediction 219 234 - -
Lele23g0374 501 MobiDBLite consensus disorder prediction 282 296 - -
Lele23g0374 501 Gene3D - 284 354 IPR036638 GO:0046983
Lele23g0374 501 CDD bHLH_AtAMS_like 294 364 - -
Lele23g0374 501 SMART finulus 297 346 IPR011598 GO:0046983
Lele23g0374 501 MobiDBLite consensus disorder prediction 352 366 - -
Lele23g0374 501 MobiDBLite consensus disorder prediction 206 234 - -
Lele23g0374 501 FunFam BHLH transcription factor 287 355 - -
Lele23g0374 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 364 IPR036638 GO:0046983
Lele23g0374 501 MobiDBLite consensus disorder prediction 260 277 - -
Lele23g0374 501 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 182 497 - -
Lele23g0374 501 CDD ACT_UUR-ACR-like 429 494 - -
Lele23g0374 501 Pfam Helix-loop-helix DNA-binding domain 298 340 IPR011598 GO:0046983
Lele23g0374 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Lele23g0374 501 MobiDBLite consensus disorder prediction 352 402 - -
Lele23g0374 501 MobiDBLite consensus disorder prediction 256 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0374 Lele-ChrLele23 2664355 2668931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0374 59 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 46.610 3.10e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele23g0374 HLH 2.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1637 21 24348680 24352969 Lele23g0374 23 2664355 2668931 hybridization
Lele22g1620 22 21740820 21745513 Lele23g0374 23 2664355 2668931 hybridization