Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0362 ATGAATTTTGTTAGAAATGGGGTTAGCAGATTGCCTCCTGGTTTTCGGTTCCAGCCAACAGATCAAGAACTCGTGTTTCAGTACTTGAAATGCAAGATCTTCTCCCTTACCTTGCCTGCTACCATTATCCCTGACCTCAACCTCTGCAACTTCGATCCTTGGGATTTGCCAGTTGAAGTAAGCAGGCGGTGGTATCTTCTTCTTCACATACATTTATATTTTGTTCTTTTCCTTTCTATCCTCGCACCTAACTCTATTTCTCTTTCTCATTCTCTAGGGTTCCTCTTTTCTGATTCCTTCCCTGGATTGAAAATGATCGACTTCGCTCGCGTCCAGAAGGAACTTGTTGAATGCGGCAAGGATGTTGAGGGCTCTGGCATCAGGGTTAACGTCAAAGGCGACAGCCTTGCCCGCTTGATTGGAACCATTCCCGGCCCTATTGGAACTCCTTATGAGGGGGGCATTTTCCAAATTGACATTACCATACCTGATGGCTATCCCTTCGAACCTCCCAAAATGCAGTTTGCAACAAAAGTCTGGCACCCTAACATCAGCAGTCAGAGTGGAGCTATTTGCCTGGACGTCTTGAAGGATCAATGGAGCCCTGCACTGACCCTGAAAACAGCGCTGCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAACCTGATGATCCTCAAGATGCTGTTGTAGCACAACAGTATCTCAAAGACTACCAGACATTTGTTGGCACCGCACGGTACTGGACTGAAGCTTTTGCCAAGGCATCATCTCTTGGGATTGAGGATAAGGTAAAGAAGCTGGCAGAGATGGGATTCCCTGAAGCTCAGGCGAGGAGTGCTTTGGAAGCTGTTGGTGGCGATGAAAACTTGGCTCTTGAAAGGCTTTGCTCTTAG 894 0.472 MNFVRNGVSRLPPGFRFQPTDQELVFQYLKCKIFSLTLPATIIPDLNLCNFDPWDLPVEVSRRWYLLLHIHLYFVLFLSILAPNSISLSHSLGFLFSDSFPGLKMIDFARVQKELVECGKDVEGSGIRVNVKGDSLARLIGTIPGPIGTPYEGGIFQIDITIPDGYPFEPPKMQFATKVWHPNISSQSGAICLDVLKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVGTARYWTEAFAKASSLGIEDKVKKLAEMGFPEAQARSALEAVGGDENLALERLCS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0362 297 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 180 196 IPR023313 -
Lele23g0362 297 Gene3D NAC domain 20 73 IPR036093 GO:0003677|GO:0006355
Lele23g0362 297 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 259 297 IPR015940 -
Lele23g0362 297 Pfam UBA/TS-N domain 261 295 IPR015940 -
Lele23g0362 297 FunFam ubiquitin-conjugating enzyme E2 27 105 256 - -
Lele23g0362 297 Pfam Ubiquitin-conjugating enzyme 110 248 IPR000608 -
Lele23g0362 297 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 106 254 IPR000608 -
Lele23g0362 297 Gene3D - 253 297 - -
Lele23g0362 297 SUPERFAMILY UBA-like 261 297 IPR009060 GO:0005515
Lele23g0362 297 SMART ubc_7 109 254 - -
Lele23g0362 297 SUPERFAMILY NAC domain 7 65 IPR036093 GO:0003677|GO:0006355
Lele23g0362 297 ProSiteProfiles NAC domain profile. 11 67 IPR003441 GO:0003677|GO:0006355
Lele23g0362 297 SUPERFAMILY UBC-like 108 254 IPR016135 -
Lele23g0362 297 Pfam No apical meristem (NAM) protein 12 67 IPR003441 GO:0003677|GO:0006355
Lele23g0362 297 Gene3D Ubiquitin Conjugating Enzyme 105 252 IPR016135 -
Lele23g0362 297 CDD UBA_II_E2_UBC27_like 261 296 IPR041974 -
Lele23g0362 297 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 136 241 - -
Lele23g0362 297 SMART uba_6 260 297 IPR015940 -
Lele23g0362 297 CDD UBCc 110 249 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0362 Lele-ChrLele23 2537169 2543552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0362 1 67 NAC Transcription Factor Family AT5G13180 56.716 2.49e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele23g0362 UQ_con 5.1e-41 CL0208