LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g0321	ATGGCTAGCTGTACTTCTCTTTCATCGTGTCCATACAGCCTTTATCGTCGTCCGAACCCAAAAAGGCGTCCCATTTTGTGCTCTGTTGGCTCTTCTTCGCTCATAGGTGTTCATGGATCTAAAGTACCCCGCAAAAGATCAAGAAAAATTGAAGGTCCTGGAAAAAGCATGGAAGACTCCGTTCAACGCAAGATGGAGCAATTTTATGAAGGATCTAATGGGCCACCCCTGCGAGTTCTTCCCATTGGTGGATTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACAATGATCGTTATATCCTTATTGATGCTGGTGTCATGTTCCCAGACTATGATGAGCTTGGAGTCCAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGGCACAAAATTGAAGCAGTTGTTATAACGCACGGTCATGAAGATCATATCGGTGCACTGCCTTGGCTCATACCAGCATTGGATACCCATACGCCAATTTTTGCATCTTCCTTTACAATGGAGCTTATTAGGAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAGTATTTCGAACAAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCTATCCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAATCACCACTAGATGGTAAAGTTTTTGACCGTGAAGTGTTGGAGGAACTCTGTAAAGAAGGAATGATGAGCGATTCAACAAACATACTTTCACCTGGAAGAACAATTAGTGAATCCTCTGTGGCAGATGCACTGTTAAGGCATATTTCTGCTGCTAAAGGAAGGGTCATTACAACCCAGTTTGCATCAAATATACACCGTCTTGGAAGTGTGAAAGCTGCAGCTGATTTAACCGGTAGAAAGATGGTGTTTGTTGGCATGTCTTTACGGACATATCTAGATGCAGCTTGGAAGGATGGAAAGGCACCATTTGATCCATCCACCCTGGTGAAAGTGGAGGATATTGACGCTTATGCTCCTAAGGATTTGCTGATTGTAACAACTGGATCTCAGGCAGAACCTCGTGCTGCCTTGAATCTTGCATCATATGGTGGTAGCCATTCTTTCAAACTGACCAAGGAAGATATAATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGATGAACCGCATATCAGAGATTGGATCATCAATAATAATGGGGAAGAATGAGGGGCTGCACACATCTGGTCATGCATACCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAACCGCAACATTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCATGAATTACTTGGAAAGTCGACTGGCATTCGACACACTGCTGTTATTAAGAACGGAGAGATGCTTGGTGTTTCGCACTTAAGAAACCGAAGAGTCCTTTCCAATGGCTTTGTTTCCCTTGGAAAAGAGAATTTACAGTTGAAGTACAGTGATGGGGACAAAGCATTTGGTACATCAAGTGAACTTTTCGTTGATGAAAGATTGAGAATTGCTTTAGATGGAATTATTGTGGTCAGCATGGAAATATTTCGCCCTGAAAATGGTGAGAGTCATTTTGAAAACACCTTAAAAGGGAAGATAAGAATTACAACAAGATGCCTGTGGCTTGACAAAGGAAAGCTGTTGGATGCGCTTCATAAAGCTGCTCATGCTGCACTTTCAAGCTGCCCGGTTAACTGTCCATTGGCTCACACGGAAAGAACTGTATCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGTGGCAAAAGACCAGAAGTTATTGCTATTGCTATAGAAAACCCTGCCGCTGTTCTTGCTGATGAGGTAAAAGCAAGGCTGTCAGGAAAATCTCATATGGGTCTTGGGATACCATCAATGAGAAAAGCTATGGATGGACGTAAAGAGGAAAAGATATCCAGTAAAATGCCAAGGAAAGGAGATGATGGCACTGATGTTGAAGGACTCCTACCTGAGGAAGATATCCCTACTCCAAGTGGAGCCGAGGGCGAGTTGCCTGATTCAGAGGATTCAGATGGATTTTGGAAATCATTCATCACACCTTTGACCGCCGAAAAGTCAATCAAAGCCAACAATGGTTATATTCCACGAAAGCAGCAAGAGTCCCAGCCGATAAAAGATGATTCTACAGACTCTGAAGAAGGTGAGCCTGAATCCAAGTCTTCGAAAACAGTGAAGAGAAATAAATGGAAACCTGAGGAAGTGAAGAAGCTGATCGATATGCGCGGGGAGCTGAACGAGAGATTTCAAGTTGTGAAGGGAAGAATGATCCTCTGGGAGGAGATATCTCAAAAGTTGTTGGCTGATGGTATCAAAAGAAGTCCAGGGCAATGTAAATCTCTGTGGACATCTTTGATACAAAAATATGCGGAGATCAAGAATGAGAAGAACAAGAAAAGCTGGCCATATCTGGAGGACATGGAAAGGATTTTGTCGGAGAACGAGGCACTGGCAGCAAAATGA	2580	0.4267	MASCTSLSSCPYSLYRRPNPKRRPILCSVGSSSLIGVHGSKVPRKRSRKIEGPGKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNNDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVVITHGHEDHIGALPWLIPALDTHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFMAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGKVFDREVLEELCKEGMMSDSTNILSPGRTISESSVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSFKLTKEDIILYSAKVIPGNESRVMKMMNRISEIGSSIIMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFVDERLRIALDGIIVVSMEIFRPENGESHFENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHTERTVSEVLRKLVRKYSGKRPEVIAIAIENPAAVLADEVKARLSGKSHMGLGIPSMRKAMDGRKEEKISSKMPRKGDDGTDVEGLLPEEDIPTPSGAEGELPDSEDSDGFWKSFITPLTAEKSIKANNGYIPRKQQESQPIKDDSTDSEEGEPESKSSKTVKRNKWKPEEVKKLIDMRGELNERFQVVKGRMILWEEISQKLLADGIKRSPGQCKSLWTSLIQKYAEIKNEKNKKSWPYLEDMERILSENEALAAK	859

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g0321	859	CDD	RNaseJ_MBL-fold	80	488	-	-
	Lele23g0321	859	Gene3D	-	769	830	-	-
	Lele23g0321	859	SMART	sant	765	827	IPR001005	-
	Lele23g0321	859	SMART	Lactamase_B_5a	89	286	IPR001279	-
	Lele23g0321	859	Pfam	Beta-lactamase superfamily domain	100	236	IPR001279	-
	Lele23g0321	859	MobiDBLite	consensus disorder prediction	729	768	-	-
	Lele23g0321	859	MobiDBLite	consensus disorder prediction	740	768	-	-
	Lele23g0321	859	MobiDBLite	consensus disorder prediction	661	685	-	-
	Lele23g0321	859	Pfam	Zn-dependent metallo-hydrolase RNA specificity domain	431	468	IPR011108	-
	Lele23g0321	859	SUPERFAMILY	Metallo-hydrolase/oxidoreductase	77	488	IPR036866	-
	Lele23g0321	859	Gene3D	-	81	490	IPR036866	-
	Lele23g0321	859	MobiDBLite	consensus disorder prediction	38	60	-	-
	Lele23g0321	859	Pfam	Myb/SANT-like DNA-binding domain	766	849	IPR044822	-
	Lele23g0321	859	ProSiteProfiles	Myb-like domain profile.	761	825	IPR001005	-
	Lele23g0321	859	MobiDBLite	consensus disorder prediction	46	60	-	-
	Lele23g0321	859	MobiDBLite	consensus disorder prediction	650	713	-	-
	Lele23g0321	859	CDD	GT1	767	832	-	-
	Lele23g0321	859	Gene3D	-	275	425	IPR042173	-
	Lele23g0321	859	PANTHER	RIBONUCLEASE J	1	859	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g0321	Lele-ChrLele23	2236198	2243653	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g0321	768	851	Trihelix Transcription Factor Family	AT2G38250	35.632	3.86e-11	63.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Lele23g0321		Lactamase_B_2	6.7e-11	CL0381