LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g0316	ATGGCAGCAGGGTGGGACAATGTTGTGAGGAGAAGAGAATCTTACAAATATAGTTCCAATAAGGAATTTGATCATTATAGTACTGGTTCTTCTGGTGTGGCAGTGGCAGTGCACCGATCTAGCAGCCGCGGCCACCACGTAAGATATAAGAACGGTCGTAGATCTTCAGATTTTGGGGATTCAGGTCCTGGACGGATAGAGTCTTATGGTAAAAGAGACGAGAGAGAGCAGCTCGAGTTTTACGGAGATAATGGGAAATATGCACCTGCATCTGTGTTTCAGGCAGATCATGGTGAAGCACCCCCAGAGAAGAGAAGAAAAATTTCTCCAATTGTATGGGACATAGCAGAAAAGGAAGTAAAAATATCTTCTAAGAACAGGTCAGCTCAGGTGACTGCTTTCTCTCCCTTTTGTCCATCTCAGCAAAGCTCTCATGGAGCCAGTGGTGTTTCTTATGGTGGAGTTGTTAATCCTGCGTCTCCAGCTGATTTCTCTAGTGTATTACCTCAAGGACATTCGGGAAATGATGGTAAATTTGTTGAACAGTCTGGTAAGAAACATGTGCAAGGTTGGAATATCACAATGTCAAGATGGTTGTCGGGTGATTATTCCCCAAGGAATGCATCTGATGATGATTGCATGCATGGAAAAGAGACATCAAGCCCAGAAAGTGGTGACTTCTTATTTGAAAGTTCAGAAGGCAAAAAATCTAGATCATCAAGTAATAGTGCAGGAGTGGACTGTTGCTGCCCTTCAAGTAAAGAAGTTAATGATTCCAAAAAGGAGTTACTTGTGGACACTATGGATGACGATGAGGCACATAGTGAAACTTCTAATGTTAGTCACCCTTCGTCAGATCCTGAAGATAGTGGGGGTTTAGTAGCGGGGCAGAGAAGCATAAACAACATCCAGAGTTGCAGAAGTGTTTTAGAATTTGAGATGATCAAGAAAATAAATGAAGGAACTTATGGTATTGTCTATAAAGCTAGGGATAAGAAGACCGGGGAAATTGTAGCATTGAAGAAGGTGAAGATGAATATGGATAGAGATGGCTTTCCACTGTCCTCTTTGAGAGAAATAAATATTCTCTCATCTTTTAATCATCCTTCTGTTGTGGAAGTTAAAGAAGTGGTGGTAGATGATTTCGATGATATTTTTATGGTAATGGAGTATATGGAGTATGACCTCAAAGGGCTGATGCAGATGATGAAGCGGCCCTTTAGTATGGGTGAAATAAAATCATTGCTGATGAAACTTCTCAAGGGTGTCAAGTATCTCCATGACAATTGGGTTCTTCACAGAGATTTGAAGACATCAAATATCCTGTTAAATAAAGAAGGTGAGCTGAAAATATGCGACTTTGGTTTATCTCGTCATTATGGAAGTCCACTCAAGCCTTATACTCCTCTTGTGGTTACTCTATGGTACAGGGCTCCTGAACTTCTGCTAGGTGCTAAAGAATACTCAATAGCGATTGATATGTGGTCAATTGGTTGCATAATGGCTGAATTAGTTGCAAAGTCACCTCTATTCCGAGGAAAATCCGAAATTGAGCAGCTTCATAACATTTTCCAAACCCTGGGCACGCCTAATGAGAAAATTTGGCCAGGAGTATCCAAATTATCTGGATTCAAGGCCAACTTTGTTAAGCAGCCGTACAATCTGTTGCGGAAGAAGTTTCCAGTTGCATCCTTCATTGGATCACCTGTTCTTTCTGAATTGGGATTTGACTTGTTGAGCAAGCTTCTAACTTATGACCCTGAAAAGAGGATATCTGCAGAAGCTGCTCTTCTTCATGACTGGTTCCATGAAGCCCCTCTTCCTAATTCTGACTCCAAGATCACATTACCTTCACAGCGCTGCTAG	1866	0.4153	MAAGWDNVVRRRESYKYSSNKEFDHYSTGSSGVAVAVHRSSSRGHHVRYKNGRRSSDFGDSGPGRIESYGKRDEREQLEFYGDNGKYAPASVFQADHGEAPPEKRRKISPIVWDIAEKEVKISSKNRSAQVTAFSPFCPSQQSSHGASGVSYGGVVNPASPADFSSVLPQGHSGNDGKFVEQSGKKHVQGWNITMSRWLSGDYSPRNASDDDCMHGKETSSPESGDFLFESSEGKKSRSSSNSAGVDCCCPSSKEVNDSKKELLVDTMDDDEAHSETSNVSHPSSDPEDSGGLVAGQRSINNIQSCRSVLEFEMIKKINEGTYGIVYKARDKKTGEIVALKKVKMNMDRDGFPLSSLREINILSSFNHPSVVEVKEVVVDDFDDIFMVMEYMEYDLKGLMQMMKRPFSMGEIKSLLMKLLKGVKYLHDNWVLHRDLKTSNILLNKEGELKICDFGLSRHYGSPLKPYTPLVVTLWYRAPELLLGAKEYSIAIDMWSIGCIMAELVAKSPLFRGKSEIEQLHNIFQTLGTPNEKIWPGVSKLSGFKANFVKQPYNLLRKKFPVASFIGSPVLSELGFDLLSKLLTYDPEKRISAEAALLHDWFHEAPLPNSDSKITLPSQRC	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g0316	621	Pfam	Protein kinase domain	312	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele23g0316	621	CDD	STKc_CDC2L1	306	602	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Lele23g0316	621	PANTHER	CELL DIVISION PROTEIN KINASE	311	608	-	-
	Lele23g0316	621	Gene3D	Phosphorylase Kinase; domain 1	295	393	-	-
	Lele23g0316	621	SUPERFAMILY	Protein kinase-like (PK-like)	311	608	IPR011009	-
	Lele23g0316	621	MobiDBLite	consensus disorder prediction	270	297	-	-
	Lele23g0316	621	MobiDBLite	consensus disorder prediction	163	184	-	-
	Lele23g0316	621	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Lele23g0316	621	ProSiteProfiles	Protein kinase domain profile.	312	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele23g0316	621	MobiDBLite	consensus disorder prediction	202	248	-	-
	Lele23g0316	621	FunFam	cyclin-dependent kinase G-2 isoform X1	297	393	-	-
	Lele23g0316	621	Gene3D	Transferase(Phosphotransferase) domain 1	394	616	-	-
	Lele23g0316	621	SMART	serkin_6	312	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele23g0316	621	FunFam	Cyclin-dependent kinase G-2	394	621	-	-
	Lele23g0316	621	MobiDBLite	consensus disorder prediction	39	73	-	-
	Lele23g0316	621	MobiDBLite	consensus disorder prediction	234	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g0316	Lele-ChrLele23	2212016	2214358	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g0316	303	608	Core Cell Cycle Gene Families	AT5G10270	46.319	6.06e-86	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Lele23g0316		Pkinase	1.2e-71	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1693	21	24868852	24871367	Lele23g0316	23	2212016	2214358	hybridization
	Lele22g1674	22	22223391	22225711	Lele23g0316	23	2212016	2214358	hybridization