Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0300 ATGGAGTCTTCTGAACCCGAATTAACTGCAGTTTCGAATTCCAACGAAAACCCAGAATTGGGCTTTCGCTCGGCCTCATCTTTCCCTAGTTCTGATCACACTTCGGAAACCTCAGATCTTAATCATCAAGCTGTGGTCGACGCACTTGATGGGGAGTTTCAGAACAAGTTGATTTTGAAGGATAAGGATGAAGAGGGAGAGACTGTGAACAAAGAATATAAATTTGATGGTACTGAGGAGGTGTGTGATAAACTCGGTGCTGGGGAATCTTATCAGGTAGATGGGTGGGGTGAATATAACGATAATTGGAATGAAAATGAGGGCAATAATTGGACTACGAATGTGAACGGGAATGAGAACGATGCGGATGGTGGAGATTATGATCTAGCTGTCCATGAAGTGGAGAGAAAGGAAGAGATAAGTGGGGATAGCAACCACCAGTATCCGGTGAGGCCTGAAGCTGAAGATTGTGGATTCTATCTGAAGAATGGATCTTGCAAATTCGGATTCAATTGCAGGTTTAATCATCCTGTTAATTGGAGGAAAAATCAGGCCGGTAAAGAGAAGTCAGGAGAGAGAGAAGAATCAACAGATAGATTGGCGCAGGCAGAATGCAAGTATTATCTATCGTCAGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCATTCAAGAGAAAAATGTTCAGTAGCCCCAGTTCTAGAGCTTAATTTTCTTGGTCTGCCTATTCGTCTGGGGGAGAAAGAGTGCCCTTATTACATGCGTACTGGCTCTTGTAAGTATGGAGCAAACTGCAAATTTAATCATCCAGATCCTACAGCTGTCGGAGGAGGTGATCTTCCTGCAAGATATGGTAATGGTGGGTCAATATCATTACAAGGTGTCTCACAGCCATCTGTACCCTGGTCTTCTCCAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGCTGTCACCTACTCAAGGCGTTTCTCCCCGAAGTTCTGAATGGAATGTGTATCAGCCACCTGTCTACCTAGCTGAGGGGAGCATGCGCCCACCGTCTGCATATGTTGTGAACAACCAAGCGATTGAGAAAAATATTTTTATGCATCATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAAAGGCCTGGGGAGCCTGAATGCAGTTACTTTTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGATTACAAAATTACCCTCTTCTATATGCACCCTCAGTGACAAGGGTCTTCCTTTGAGACCAGACCAGAATGTGTGCACGCATTACAGTCGCTATGGAATCTGCAAATTTGGACCAGCTTGTAAATTTGACCACCCACCCGATAAACCCGTCGCCCTGTACGGGGCCTCCACTTGA 1401 0.4375 MESSEPELTAVSNSNENPELGFRSASSFPSSDHTSETSDLNHQAVVDALDGEFQNKLILKDKDEEGETVNKEYKFDGTEEVCDKLGAGESYQVDGWGEYNDNWNENEGNNWTTNVNGNENDADGGDYDLAVHEVERKEEISGDSNHQYPVRPEAEDCGFYLKNGSCKFGFNCRFNHPVNWRKNQAGKEKSGEREESTDRLAQAECKYYLSSGGCKFGKACKYNHSREKCSVAPVLELNFLGLPIRLGEKECPYYMRTGSCKYGANCKFNHPDPTAVGGGDLPARYGNGGSISLQGVSQPSVPWSSPRTLNETAAFMPMMLSPTQGVSPRSSEWNVYQPPVYLAEGSMRPPSAYVVNNQAIEKNIFMHHQKKMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPRNRITKLPSSICTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPPDKPVALYGAST 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0300 466 SUPERFAMILY CCCH zinc finger 150 179 IPR036855 GO:0046872
Lele23g0300 466 ProSiteProfiles Zinc finger C3H1-type profile. 380 408 IPR000571 GO:0046872
Lele23g0300 466 SUPERFAMILY CCCH zinc finger 246 272 IPR036855 GO:0046872
Lele23g0300 466 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Lele23g0300 466 PANTHER PROTEIN PHOSPHATASE RELATED 47 456 - -
Lele23g0300 466 MobiDBLite consensus disorder prediction 1 42 - -
Lele23g0300 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 431 455 IPR000571 GO:0046872
Lele23g0300 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 226 IPR000571 GO:0046872
Lele23g0300 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 382 407 IPR000571 GO:0046872
Lele23g0300 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Lele23g0300 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Lele23g0300 466 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Lele23g0300 466 SUPERFAMILY CCCH zinc finger 385 410 IPR036855 GO:0046872
Lele23g0300 466 SMART c3hfinal6 428 455 IPR000571 GO:0046872
Lele23g0300 466 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Lele23g0300 466 SMART c3hfinal6 380 407 IPR000571 GO:0046872
Lele23g0300 466 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Lele23g0300 466 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Lele23g0300 466 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Lele23g0300 466 Gene3D - 188 275 - -
Lele23g0300 466 SUPERFAMILY CCCH zinc finger 203 229 IPR036855 GO:0046872
Lele23g0300 466 MobiDBLite consensus disorder prediction 1 43 - -
Lele23g0300 466 Gene3D - 428 462 - -
Lele23g0300 466 ProSiteProfiles Zinc finger C3H1-type profile. 428 456 IPR000571 GO:0046872
Lele23g0300 466 Gene3D - 337 415 - -
Lele23g0300 466 Gene3D - 120 187 - -
Lele23g0300 466 SUPERFAMILY CCCH zinc finger 426 453 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0300 Lele-ChrLele23 2059678 2062928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0300 376 461 C2H2 Transcription Factor Family AT3G02830 48.837 2.98e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele23g0300 zf-CCCH 1.6e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0300 23 2059678 2062928 Lele24g1654 24 22033969 22037555 ECH
Lele23g0300 23 2059678 2062928 Lele23g0300 23 2059678 2062928 ECH
Lele21g1711 21 25010505 25013734 Lele23g0300 23 2059678 2062928 hybridization
Lele22g1688 22 22353706 22356994 Lele23g0300 23 2059678 2062928 hybridization