Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0299 ATGGCGGGTTCAGCAGCTCTGGCACCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTAGCTCCAGAGTACCGCCCTACCTTGGCTGAGTTCCAAGATCCGATATCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAATACGGAATATGCAAAATTGTTTCCCCCGTGCCACCTTCTTCAAAAAAGACAGCAATTGCAAATCTTAATCGCTCGTTGGCGGCACGAGCTGCTTCTTCTGACTCTTCTAATTCGAAATCCCAGCCTGCATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCGGCGCAGCGTCCTGTGTGGCAGAGTGGGGAATACTACACTTTTCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTATCTGAAGAAATGGGCTAAGAAAGGAGGGCTCTCGCCTCTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAACGATATGCCTGGTTCGGCTTTTGTTCCCGTGAATGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTATCACGGGCAAATGGCTCTCTGTTAAAGTTTATGAGGGAGGAGATTCCAGGTGTTACATCACCGATGGTGTACGTAGCTATGCTATTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGCGTACCGCGGGATGCAGCTGTGGCATTCGAGGAAGTGGTCAGAATTCATGGTTATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTACTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTGGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGGGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCCAACATTGCGACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTAGGAGGGCATCAATAAATTATCCGCCCATGGTCTCACATTTCCAGTTACTTTATGATCTTGCCCTGGCTTTGTGTTCGAGAATTCCTGGAGGCATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGACTTGCTTCATGGTCTTGGTAAAGGATCTACTATAGTACTTCTTCCTCGGAGCTCTTCTGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTCTCCCAGTGCCTGCAATTCTGAGGGAGTGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAAGGATTTTATTCAGTAAAAGAGAAGTTCGCTTCTTTGTGCGAAAGGAACAGGGTCTCATTAAGTGTAAATGATAACTTATGCTCTTCAAGTTCTGCGCCACTTCAAAGAGACACTGAAAGAGAGAAAAGCCAAGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACTTGTGGTATATTGAGCTTTGCTTGCGTTGCTATTGTGCAGCCTAGGGAACCAGCAGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGTTTGTTGGTTCTGGAGTAAGCATCAGTAAGTTTACACATGCCCATGGAGATGCAACTACGTCTGAGAAAAACACCTTTGCAGGATGGAAGGTCAAAACGACCCCAGACTATGATCTTCCTGATCAATCTGTAGGATACCAGGTACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTACTAAAGGACTAAAACAAACATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAGGTTGACCCGGATATTGCAGTTCGTGATAATGATTCTGATGTTATGAACCGTCCATCAGGTAGTATATCTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCAATGCAAGTGCAGTCAGGGTTCATGATGATTATGAGCAAAAAGCAAACTCAGAAGGTTGTGATACCACTTCAGGGACTGTGTTTAAGAATACAAGTTGTACCTTAAATTATTCTCAAGATGGTCGTGAGGCTGAAACATCAATGCTTCGTAACTCTGGATGTCCCACTGGTAATAGAAGTGCTTCATTTTTGCCACATTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGTTGAAGTGGAGCAGCAACTTCACCCAATAGGAGGAGCACACATATTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCAAGAAATGTGGCAGAAGAACTGGGTATTGATGGCATATGGAAGGATCTTGATTACAGAAATGCCACCCCTGAAGATGAGGAGAGGATCCAGTCCGCTCTGGATAGTGAGGAGGCTATTCCTGGAAATGCAGATTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAACCTTAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCTTATAATTCTGTCATATACTATGCATTTGGCCGTAGTACTCCAGCAAGCTCACCCACAGAACCCAAGGTTTACCAAAGAAGGTCCAGCAAGCAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGAGAAAGTCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGATCAGAAAGCGCCCACACAGACAATTTCGCTACTAGAAAATCTGCTAAGAAAAGGAAAACGGCTGTGGAGAGTAGAAAATCCAGGAAAGCCAGTTTTGCTGAGAGAGAATATGTTTCGGATAATTCGATTGAAGAGAAATACAATCCACAGCACTATTCTAGAAGCAAGCAAGCCAAATATTTTGACAAAGATGATGCAGCATCAGAAGAGGATTATTCTCCTCTGCAGCAATATGGAAAACTGACAAGAAAGAAAGCCAAATACAAGGAAAGTGATGAAGTTTCAGATGATTCCATGGATGCTAATGCTCACATGCAGCATGGAAGGAATTTCAAATTCAAAGAACCTAAATTTATTGACAGTGATGTTGTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGAGAGCTTAGCAACAAACAAATTGAAGACTGCGAAAGAGATGGAATTTCAGAGGATTCGATGGGTGGCAGTTCTCTTAAGCGGCGGAGGAAGACTAGTAAAAGCAAGCCAGCCAAATATGTTGCTAAAGATGTAACTTCTGATGACCAAATGGAGGATCATTTTCAGAAGCAGCAAAGAAGGATTCCTAAAAGCAGACAAGCCAAATACCTTGATGGAGAAGATATCATGGTATCTGATGACCAACTGGAGCATCGAATACATAAGCAACAACGATCTAAAGGCAGGCGAGCCAAATACCTCGCTGCAGAGGATATTACATCTGATGACCAACTGGAGGACCACTCTGGCAAGTGTCTTAGGAGGATTCCTAAAAGCAGACAAGGTAAATGCCTCGTTGAGGAAAATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCCACGTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCCAGTTAAAAGCATGGATGAAGAAGACATAAATTCTGATGATCAAATGGAGGATTCATCTCATCAGCAGCGTAGGAGGATTCTTCGAAGCCAGCAATCTAAGTTAGAGGCACGGCAAGAAATGAAACAATCTAACTCTTGCCGTGTGAAAGAACAGACATCCCAGCCTCTAAAACGAGGCGCTCAGCTGCTAGTAAAACCAAAGACTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAGTCAACCTAATAACTTTAGAGATTTTAACTTATGTTCAGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGTACCAAAAGTTGAGGAGCCTGAAGCAAAACCAAAAGGAAAGGTAAACCAAAGGAAGAAGGTGAACAATGCAACAGCTTTGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGTTGCACTATGAGTTTTAACTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGCGGGAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCACGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACATTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACTGGGGCCCGTCCATATGTTTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTTTCCGATTTCAGTCGCCACAAGCGAAAGACTGGCCATTCAGCAAAGAAGAGTCGTTAA 4674 0.4403 MAGSAALAPEPNSEVFSWLKSLPLAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVSPVPPSSKKTAIANLNRSLAARAASSDSSNSKSQPAFTTRQQQIGFCPRKQRPAQRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGRKYREAGEGMTLGETAWNMRGVSRANGSLLKFMREEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNDLLHGLGKGSTIVLLPRSSSDISVCSKLRVGSQQLKVNPGYSPSACNSEGVNSSKGFVSDDLVFSRTTQVKGFYSVKEKFASLCERNRVSLSVNDNLCSSSSAPLQRDTEREKSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWFVGSGVSISKFTHAHGDATTSEKNTFAGWKVKTTPDYDLPDQSVGYQVQAEDQSHEVALRTKGLKQTSALGLLASAYGNSSDSEEDQVDPDIAVRDNDSDVMNRPSGSISQNMSSLPSHFQDCNASAVRVHDDYEQKANSEGCDTTSGTVFKNTSCTLNYSQDGREAETSMLRNSGCPTGNRSASFLPHSDEDSSRLHVFCLEHAVEVEQQLHPIGGAHILLLCHPDYPKVEAEARNVAEELGIDGIWKDLDYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSTPASSPTEPKVYQRRSSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKVLHGWSLPDKKIERSESAHTDNFATRKSAKKRKTAVESRKSRKASFAEREYVSDNSIEEKYNPQHYSRSKQAKYFDKDDAASEEDYSPLQQYGKLTRKKAKYKESDEVSDDSMDANAHMQHGRNFKFKEPKFIDSDVVSDDTMGYDSDSQLRELSNKQIEDCERDGISEDSMGGSSLKRRRKTSKSKPAKYVAKDVTSDDQMEDHFQKQQRRIPKSRQAKYLDGEDIMVSDDQLEHRIHKQQRSKGRRAKYLAAEDITSDDQLEDHSGKCLRRIPKSRQGKCLVEENVMSDDQLEDHFQKPRGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKPVKSMDEEDINSDDQMEDSSHQQRRRILRSQQSKLEARQEMKQSNSCRVKEQTSQPLKRGAQLLVKPKTSQKMKQPPRVQKSQPNNFRDFNLCSEEEEEGGPSTRLRKRVPKVEEPEAKPKGKVNQRKKVNNATALKVSKTKDEEAEYECDIDGCTMSFNSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0299 1557 Pfam jmjN domain 26 58 IPR003349 -
Lele23g0299 1557 SUPERFAMILY beta-beta-alpha zinc fingers 1505 1549 IPR036236 -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1246 1419 - -
Lele23g0299 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1497 1519 IPR013087 -
Lele23g0299 1557 SMART JmjN_1 24 65 IPR003349 -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 971 989 - -
Lele23g0299 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1465 1494 IPR013087 -
Lele23g0299 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1467 1489 IPR013087 -
Lele23g0299 1557 SMART cupin_9 196 365 IPR003347 -
Lele23g0299 1557 FunFam Probable lysine-specific demethylase ELF6 1522 1551 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 971 1007 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1385 1418 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1146 1176 - -
Lele23g0299 1557 Gene3D Cupin 18 369 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1111 1126 - -
Lele23g0299 1557 SMART c2h2final6 1442 1464 IPR013087 -
Lele23g0299 1557 SMART c2h2final6 1465 1489 IPR013087 -
Lele23g0299 1557 SMART c2h2final6 1495 1519 IPR013087 -
Lele23g0299 1557 SMART c2h2final6 1525 1551 IPR013087 -
Lele23g0299 1557 FunFam Probable lysine-specific demethylase ELF6 1492 1521 - -
Lele23g0299 1557 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Lele23g0299 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1495 1524 IPR013087 -
Lele23g0299 1557 Gene3D Classic Zinc Finger 1465 1549 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1285 1339 - -
Lele23g0299 1557 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Lele23g0299 1557 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1055 1072 - -
Lele23g0299 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1527 1551 IPR013087 -
Lele23g0299 1557 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1491 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1037 1072 - -
Lele23g0299 1557 SUPERFAMILY beta-beta-alpha zinc fingers 1465 1501 IPR036236 -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 81 112 - -
Lele23g0299 1557 Gene3D Classic Zinc Finger 1415 1464 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1367 1384 - -
Lele23g0299 1557 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1102 1176 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 667 706 - -
Lele23g0299 1557 SUPERFAMILY Clavaminate synthase-like 191 379 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 690 706 - -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 81 106 - -
Lele23g0299 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1525 1556 IPR013087 -
Lele23g0299 1557 MobiDBLite consensus disorder prediction 1246 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0299 Lele-ChrLele23 2049515 2057363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0299 1123 1556 C2H2 Transcription Factor Family AT3G48430 38.737 1.02e-70 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele23g0299 JmjC 4.5e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0299 23 2049515 2057363 Lele23g0299 23 2049515 2057363 ECH
Lele21g1712 21 25016207 25026529 Lele23g0299 23 2049515 2057363 hybridization
Lele22g1689 22 22359180 22368639 Lele23g0299 23 2049515 2057363 hybridization