LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g0285	ATGTCTATCACTTCTATACCTTCCTTCAAGGCCCTGACAATGGCAGAATCGCGCATTCTCTCTCTTCCCTCTGTAATTTCCAACAAAACCAAGCACCCCTTCATCTCCATTCCGTCTAAACCTTTTAAGCTTCAGGCCTCTTGCTTCTATTCTTCCCTCTTTCTACCATCTCTGTCACTCGCTAGGAAAACCCACAATTTATCTATACTTACATTCGTAGCCCAGACATCGGACTGGGCTCAACAGGACGAAGACAACCCCGTCACTATCGATGAAGAGGAAAATCAAGACGTGGATGACGCAGAAGCTCGTCTTTCGGATTGGGAGGTTGATGGTGAAGGCGCAGGAATTGAGGCTAGCGAGGGCGAAGGAGAGAGTAATGAAGATGATGAATTTTCAGAACCACCCGAAGATGCAAAACTTTTTGTTGGTAATTTGCCTTATGATGTTGATAGCCAGAGATTAGCCATGTTTTTTGAGCAGGCTGGAACTGTGGAAATTGCCGAGGTTATTTATAATAGGAGCACTGACCAAAGTCGTGGGTTCGGATTTGTAACGATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTCGAAAAGTTCCACCGCTACGATCTAGATGGAAGACTGTTGACTGTCAACAAGGCTGCTCCAAGAGGAGCACAGCCTGAACGCCCACCACGGGTCTTCGAACCATCCTTTAGAGTCTACGTAGGCAACTTGCCATGGGATATTGATAATGGTCGCCTGGAGCAGATTTTCAGCGAGCATGGTAAGGTTGTGAGTGCCCGGGTAGTCTATGACAGAGAGACAGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGCGGCTTTTGA	957	0.4713	MSITSIPSFKALTMAESRILSLPSVISNKTKHPFISIPSKPFKLQASCFYSSLFLPSLSLARKTHNLSILTFVAQTSDWAQQDEDNPVTIDEEENQDVDDAEARLSDWEVDGEGAGIEASEGEGESNEDDEFSEPPEDAKLFVGNLPYDVDSQRLAMFFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYDLDGRLLTVNKAAPRGAQPERPPRVFEPSFRVYVGNLPWDIDNGRLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g0285	318	MobiDBLite	consensus disorder prediction	106	138	-	-
	Lele23g0285	318	Gene3D	-	74	221	IPR012677	-
	Lele23g0285	318	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	235	305	IPR000504	GO:0003723
	Lele23g0285	318	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	141	210	IPR000504	GO:0003723
	Lele23g0285	318	FunFam	31 kDa ribonucleoprotein, chloroplastic	223	317	-	-
	Lele23g0285	318	SUPERFAMILY	RNA-binding domain, RBD	135	227	IPR035979	GO:0003676
	Lele23g0285	318	FunFam	31 kDa ribonucleoprotein, chloroplastic	74	222	-	-
	Lele23g0285	318	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	233	311	IPR000504	GO:0003723
	Lele23g0285	318	SUPERFAMILY	RNA-binding domain, RBD	224	316	IPR035979	GO:0003676
	Lele23g0285	318	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	139	217	IPR000504	GO:0003723
	Lele23g0285	318	Gene3D	-	222	318	IPR012677	-
	Lele23g0285	318	CDD	RRM_HP0827_like	140	217	-	-
	Lele23g0285	318	PANTHER	OS02G0815200 PROTEIN	36	313	-	-
	Lele23g0285	318	SMART	rrm1_1	140	213	IPR000504	GO:0003723
	Lele23g0285	318	SMART	rrm1_1	234	307	IPR000504	GO:0003723
	Lele23g0285	318	MobiDBLite	consensus disorder prediction	114	135	-	-
	Lele23g0285	318	CDD	RRM_HP0827_like	234	310	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g0285	Lele-ChrLele23	1952179	1954632	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g0285	137	315	Eukaryotic Initiation Factors Gene Family	AT3G16380	35.638	1.15e-22	96.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele23g0285	23	1952179	1954632	Lele24g1670	24	22138933	22141589	ECH
	Lele23g0285	23	1952179	1954632	Lele23g0285	23	1952179	1954632	ECH
	Lele21g1726	21	25114126	25116592	Lele23g0285	23	1952179	1954632	hybridization
	Lele22g1701	22	22459006	22461656	Lele23g0285	23	1952179	1954632	hybridization