Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0270 ATGCCGCAGGATTCGTCTGAACAAGATGATCCTGATTCTGAGTTCGTGGAGGTCGACCCCACTGGTCGATATGGTCGGGGGGCTTTCAAGAAGGTATATAGAGCATTTGATGAGTTGGAAGGAATTGAAGTGGCCTGGAATCAGGTTAAGGTGGCAGATCTATTGCGCAACAATGAAGATTTGGAGCGCCTATATTCAGAAGTGCATTTGCTGAAGACTTTGAAGCATAAAAATATAATTAAATTTTACAATTCATGGGTTGATACAAATAATGAGAACATCAACTTCATCACTGAAATTTTCACTTCTGGAACGTTACGCCAATATCGGCAGAAACATAAGCATGTCGACTTGAGAGCATTGAAGAAATGGTCTAGACAGATTTTGGAGGGCCTTTCTTATCTTCACAGCCATGATCCACCGGTTATTCACCGAGATTTAAAGTGTGACAATATTTTTGTCAATGGAAATCATGGCGAGGTTAAAATTGGCGACTTGGGATTGGCTGCCATACTTCAGCAAGCCAATTCAGCTCACAGTGTTATAGGTACTCCTGAGTTTATGGCTCCCGAGCTTTATGAAGAGGAATACAATGAACTTGTTGACATCTATGCTTTTGGTATGTGCTTGCTTGAGTTGGTGACTGTCGAGTATCCATATGTTGAATGTGCTAATGCTGCTCAAATATACAAGAAAGTGACATCTATCCTTTTTGTTGACTTGTTGTCGTATGGAGTTTCACAAGTTCCATGAAAAGGCTGTTCTGAGCTAAAGGGAATCAAGCCAGCATCACTGGCAAAAGTGAAAGACCCTGGAGTTAAAGCATTTATAGAAAAGTGTATTGCAAATGTTTCTGAGCGGTTACCTGCAAGGGAACTCTTAATGGATCCCTTTCTTTTGCCAGATGATGAAAGTGACAGTGTAGGTGGTTCTTTAAGGTCCAGAGCCCCTGATTTCGGACATAGTGACCATCATGTTATTCATAATCATCCTGAAGAAACTTCTGTCGAGACTGGTTGGGCATTCAGGGTAGAAGGTCAAAGGAGAGATGTCAATACTATATTTCTGAAACTGAGAATAGTAGACTCCTCAGGTGACATTTGCAACATCCACTTCCCTTTTGATGTTGAAGCAGACACTGCAATTGCTGTTGCTAGTGAAATGGTTGAGGAGTTGGAACTTACGGATCAAGATGCTACAACTATTGCTGAGATGATTGACTTGGAAATTCGCTCTCTCATTCCATATTGGAATCCTGATGAAACTCTTACTGCTGCTAGCATTGGTCAAGAATTAGCACTAGAAGCTTTAGGTGGCCGTACCTCTGAAACTAGGGATGAGGTTTCTCCACATGGAAATAGTTCTACAGCTTCTACTCGCAGTCTTTCACTGGAACGATTACCTTCAGGCCGTAACTACTGGTCTGACTCACCCAGGATAGGTAGAAACTCTCCATTAAGGCTGGGTGTTTCAAAATTGTCTGGTCAGGTGGATTTGAATGTTGCAGGAACCTCAACCACATACAATGCTACTTCAATTGAGCAGCAGGATGGCAACTACAGTTGTGATGATGATAATAGTGTAGAGAAGAAATCTAGTGGGACTGCTGGTTCCCATTCTAGTGAGAAAAGTATTACATCTGGGGATTTACAGGCAACCAACGGAGAGTTTCCTCTGGTAGAAAAACCTATAGAATTGAAAGATGATGAATTAGATGTCAATATAATTGCTGCAAAACTTGAGCAATTATTGGTAAAACATAGAGAGGAGGAAGATGAACTAAAGAAGAAGCATGAATTAGCTGTCTCAAATTTTTTGAAGGAACTTCCTCAAAAAATTCAACATGAGGTCTTAAATGTGTGCAACTTGGAGACATCTGACAGTGGAAATGTAAACTACTTGGCTTCATCATTCATGCTTGCTTTAGGGGAGGGCATGCCTTGTGCTATTTGTGATTGCATGAGTGCTCTTGGTATGATGCTAGAAGACAATGCATCAACATCATAA 2007 0.4106 MPQDSSEQDDPDSEFVEVDPTGRYGRGAFKKVYRAFDELEGIEVAWNQVKVADLLRNNEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTNNENINFITEIFTSGTLRQYRQKHKHVDLRALKKWSRQILEGLSYLHSHDPPVIHRDLKCDNIFVNGNHGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSILFVDLLSYGVSQVPXKGCSELKGIKPASLAKVKDPGVKAFIEKCIANVSERLPARELLMDPFLLPDDESDSVGGSLRSRAPDFGHSDHHVIHNHPEETSVETGWAFRVEGQRRDVNTIFLKLRIVDSSGDICNIHFPFDVEADTAIAVASEMVEELELTDQDATTIAEMIDLEIRSLIPYWNPDETLTAASIGQELALEALGGRTSETRDEVSPHGNSSTASTRSLSLERLPSGRNYWSDSPRIGRNSPLRLGVSKLSGQVDLNVAGTSTTYNATSIEQQDGNYSCDDDNSVEKKSSGTAGSHSSEKSITSGDLQATNGEFPLVEKPIELKDDELDVNIIAAKLEQLLVKHREEEDELKKKHELAVSNFLKELPQKIQHEVLNVCNLETSDSGNVNYLASSFMLALGEGMPCAICDCMSALGMMLEDNASTS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0270 668 Pfam Protein kinase domain 24 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0270 668 SUPERFAMILY Protein kinase-like (PK-like) 25 338 IPR011009 -
Lele23g0270 668 MobiDBLite consensus disorder prediction 1 20 - -
Lele23g0270 668 MobiDBLite consensus disorder prediction 1 15 - -
Lele23g0270 668 Gene3D Transferase(Phosphotransferase) domain 1 101 304 - -
Lele23g0270 668 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 615 - -
Lele23g0270 668 Gene3D - 352 431 - -
Lele23g0270 668 FunFam WNK protein kinase 101 248 - -
Lele23g0270 668 CDD STKc_WNK 25 299 - -
Lele23g0270 668 FunFam Probable serine/threonine-protein kinase WNK1 10 99 - -
Lele23g0270 668 MobiDBLite consensus disorder prediction 531 552 - -
Lele23g0270 668 Coils Coil 577 600 - -
Lele23g0270 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Lele23g0270 668 MobiDBLite consensus disorder prediction 510 552 - -
Lele23g0270 668 SMART serkin_6 18 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0270 668 MobiDBLite consensus disorder prediction 437 462 - -
Lele23g0270 668 ProSiteProfiles Protein kinase domain profile. 18 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0270 668 MobiDBLite consensus disorder prediction 448 462 - -
Lele23g0270 668 Gene3D Phosphorylase Kinase; domain 1 8 99 - -
Lele23g0270 668 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 356 407 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0270 Lele-ChrLele23 1838120 1841716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0270 13 420 MAP Kinase Kinase Kinase AT3G22420 50.749 2.35e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lele23g0270 Pkinase 1.1e-49 CL0016