Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0263 ATGGATCCCAACCCTGGAAACTTCCCTCTTCTCTCCTCCTTCATGTCCCGTCTCCCTCCTCTCGCTCCCACCGCCGCCTCTTCCAGTTCTGAGCTCTACGACATCGAACAGCCCCGCTTCCCTCCACCCTCCGATCCCTCTTCCTCATCCTCTTCCGGTACCAAAAATCCTGAACTCTTTGCCCAGATGCCCCGCATCACTGACCCGAAACTCTTGGCTTCCATTAGCCGCACCATCTACGACGTCGCTCAGACCCGATCCATGCTCAGGATCCTCGGCGACCGTCCTGACCATGAATCCGTCGACAATGCCAAGGCCAAGCTCGCTGATTTGGATGCCCATCTGTCCCGACAGCTGGAGGAGATCGTGCTCTCTCCTAAACCTGCTCATCTCGAAACCCATCAATGGCGGAGTCAGAAGGCGGAGAAAGAGAAAGAGTGCAGGAAATTAGCGGAGGATGAGAAGCGAGTATATAAAGCAGTGCTACAATTGGACGAGATGCACAATGCGTACGAGAAGTTGCTCAAGGACGCAGAGAAAAGATTGGAAGCGATTTACAGTTCCGGCGACGGAGCAGCAGATCCCAAGGAAGAGAAGTCGGAGACGGAGGAGGTCAATGAAGAGGTGGTTGGGATTCTTCAAAAGGCCTATGGACAAGGGATAGAGAGAATTGATCTTTCGAATCGCGGCCTGAGGTTGCTTCCCGAGGCCTTTTGGCGGATTTCAGGGTTGTTGGTGCTTGATATTTCCACCAATCAGCTGACGGAGATTCCTGACGCGGTTGCCGGGTTGCAAAACCTTGAGGAGCTTAACGTATCTGCAAATCATTTGGAATCACTTCCGGATTCAATTGGCTTGCTTCAAAAGTTGAAAATCCTGAATGTCTCGACAAACAAACTCACCGCCCTTCCTGACTCCATCTCCCAGTGCAGGTCATTGGTGGAGTTGGATGCTAGCTTCAACAGTCTCAGGTATTTGCCTACAAATATTGGGTATGAATTGCAGAACTTGAAGAAGCTGTTGATTCATCTCAACAAACTTCGGTCGCTTCCCTCATCTGTTTGTGAGATGAGATCGTTGAGCTATCTAGATGCCCATTTCAATGAGCTGAATGGACTTCCAAGCGCATTTGGAAGATTGACTAACCTTGAGTTGCTCGACCTGAGCAGTAATTTCGCCGACCTTCAAGAACTTCCGGCGACATTCTGTGATCTGACTAACCTCAGGGAGTTGGATCTCAGCAACAACCAGATCAGTGAACTTCCAGACACATTTGGTCGGCTGGAGAATTTGAAGAAACTGAACTTGGAGCAGAACCCTCTGGAAGTGCCGCCAAAAGAGGTAGTGAGGCAAGGAGCTCAAGGAGTGAGGAATTACATGACAACAAGGTTGGTGAACATATTAAACGAGGAAGAAAGGAACAGGGTGGCGATGCAAGAACAAGCCGAGATGGGGTGGTTGTCGCGAAGCACCTCCTGGTTGAAGAACGTCTCTGAGAATGTTGCAGAATATGTCACGTCTCCCAAGAGCGGTACTCAAAAAGTGGCTTATCTTAATGAGCAGCTATAA 1569 0.4997 MDPNPGNFPLLSSFMSRLPPLAPTAASSSSELYDIEQPRFPPPSDPSSSSSSGTKNPELFAQMPRITDPKLLASISRTIYDVAQTRSMLRILGDRPDHESVDNAKAKLADLDAHLSRQLEEIVLSPKPAHLETHQWRSQKAEKEKECRKLAEDEKRVYKAVLQLDEMHNAYEKLLKDAEKRLEAIYSSGDGAADPKEEKSETEEVNEEVVGILQKAYGQGIERIDLSNRGLRLLPEAFWRISGLLVLDISTNQLTEIPDAVAGLQNLEELNVSANHLESLPDSIGLLQKLKILNVSTNKLTALPDSISQCRSLVELDASFNSLRYLPTNIGYELQNLKKLLIHLNKLRSLPSSVCEMRSLSYLDAHFNELNGLPSAFGRLTNLELLDLSSNFADLQELPATFCDLTNLRELDLSNNQISELPDTFGRLENLKKLNLEQNPLEVPPKEVVRQGAQGVRNYMTTRLVNILNEEERNRVAMQEQAEMGWLSRSTSWLKNVSENVAEYVTSPKSGTQKVAYLNEQL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0263 522 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Lele23g0263 522 SUPERFAMILY L domain-like 219 445 - -
Lele23g0263 522 FunFam Plant intracellular Ras-group-related LRR protein 2 329 501 - -
Lele23g0263 522 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Lele23g0263 522 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Lele23g0263 522 Pfam Leucine rich repeat 400 441 IPR001611 GO:0005515
Lele23g0263 522 Coils Coil 161 181 - -
Lele23g0263 522 MobiDBLite consensus disorder prediction 19 58 - -
Lele23g0263 522 PANTHER - 220 364 - -
Lele23g0263 522 SMART LRR_bac_2 241 260 - -
Lele23g0263 522 SMART LRR_bac_2 380 401 - -
Lele23g0263 522 SMART LRR_bac_2 405 424 - -
Lele23g0263 522 SMART LRR_bac_2 310 329 - -
Lele23g0263 522 SMART LRR_bac_2 287 306 - -
Lele23g0263 522 SMART LRR_bac_2 334 353 - -
Lele23g0263 522 SMART LRR_bac_2 357 376 - -
Lele23g0263 522 SMART LRR_bac_2 264 283 - -
Lele23g0263 522 FunFam Plant intracellular Ras-group-related LRR protein 9 143 325 - -
Lele23g0263 522 Coils Coil 101 121 - -
Lele23g0263 522 SMART LRR_typ_2 334 357 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 405 427 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 380 404 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 428 451 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 287 310 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 264 286 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 311 333 IPR003591 -
Lele23g0263 522 SMART LRR_typ_2 241 263 IPR003591 -
Lele23g0263 522 PRINTS Leucine-rich repeat signature 244 257 - -
Lele23g0263 522 PRINTS Leucine-rich repeat signature 405 418 - -
Lele23g0263 522 Gene3D Ribonuclease Inhibitor 129 328 IPR032675 -
Lele23g0263 522 Gene3D Ribonuclease Inhibitor 329 462 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0263 Lele-ChrLele23 1806059 1807878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0263 234 444 Receptor kinase-like Gene Family AT5G56040 32.231 1.15e-17 84.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1087 17 21307545 21312448 Lele23g0263 23 1806059 1807878 CCT
Lele18g0452 18 2644256 2645707 Lele23g0263 23 1806059 1807878 CCT
Lele19g0472 19 2681248 2686046 Lele23g0263 23 1806059 1807878 CCT
Lele20g0981 20 15846733 15848181 Lele23g0263 23 1806059 1807878 CCT
Lele23g0263 23 1806059 1807878 Lele23g0263 23 1806059 1807878 ECH
Lele21g1746 21 25249584 25251657 Lele23g0263 23 1806059 1807878 hybridization