Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0258 ATGAAACCTTACGACAACAGATATACAGACTCGACTTCTTATCGCAACCGCAGGAGTGATTTAATTGGATCCGTGCCGCCGATGGTCCCTCCAACGATTGGCGGTGCCAGCTCGAGCCAGGGAGGTCCTGCTTCTTATGGTCCTCCACCGGTTGGTTATAACGTGGGTGGAAGAGGTGCCGGGAGTGCTTTCGGAACGGCACCTGTTGCCCCAAATTATAATGAGTTGTCGCCGTTCATGCCGCCTCCTGGAGGCTTTGACATAGGTCGCGGTGGGGGCTTGGGCGGTAGACTTGGAAACGGTCACGTTGGTGATAGAAAAGATGAGGTAGGTCGTCGCGGTAGTGGAAGAGATCGGGGTAGCAGTTTGACTGGAGGTCGGGGAGGTGGTAGATTTGGTGGAGCTTACGGAGACAGGATCCGGGGGAGAGGAAGGGGGCCTAGAGGTAGAGGTTTCGGTGGAAGCGCTGGATTTGGCGTTGGCCGTGGCCGTGGTGATGGTGGTGGTGGTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACGTAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCCTTTGAGAAGAATTTTTACATTGAAAGCCCATCGGTGCGGGCAATGTCTGATCATGAGCTTATGGTTTACCGTGCCAGTAGGGAGATCACAGTGCAAGGGCATGACATTCCTAAACCGATTCGAACATTCCAAGATGCAAATTTTCCTGGTGACGTACCTTTCCATGATTACTGCCTTGAGGTGATTGCCAAATTGGGTTTTGTGGAGCCTACACCAATTCAGGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCGTATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTGGGTGGAGGTCCCATTGTTTTAGTTCTGGCACCAACTAGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGTTCTCGAGCAAATATTAGAAGTACTTGTATCTATGGCGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAAAGAGGTGTTGAAATTGTTATTGCCACACCTGGTCGCCTTATAGATATGTTGGAAGCTCAGCATACAAATTTGCGAAGAGTGACTTACCTTGTGTTGGATGAAGCTGATCGAATGTTGGACATGGGCTTTGAACCTCAAATAAGAAAAATTATTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAGACTCTGGCAAGGCAGTTTCTACGCAATCCATATAAGGTAATTATTGGATCACCAGATTTGAAAGCAAATCAATCTATAAATCAACTTGTTGAAGTTTTAACAGAAGTGGAGAAATACAATAGATTGATCAAACTGCTTAAAGAAGTGATGGATGGGAGTCGAATTCTTATATTTATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGACAATTGAGAATGGATGGCTGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAGTAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTTATAAGGCTATTGGCAAAGATGATGCTCTTTTGTTGCTTCCAGTACATTGCCTGGTGTTGTTACTAGTTACTATCATATTTTTGGTGGTCATGTTGCATGGATACCTGGAGCACAGTTTCATTAACATGCCTGAGATGCTGCCCTATCATTTCTAG 1815 0.4667 MKPYDNRYTDSTSYRNRRSDLIGSVPPMVPPTIGGASSSQGGPASYGPPPVGYNVGGRGAGSAFGTAPVAPNYNELSPFMPPPGGFDIGRGGGLGGRLGNGHVGDRKDEVGRRGSGRDRGSSLTGGRGGGRFGGAYGDRIRGRGRGPRGRGFGGSAGFGVGRGRGDGGGGRGGRHGGSSKDDLDNVALPKQDFRNLVPFEKNFYIESPSVRAMSDHELMVYRASREITVQGHDIPKPIRTFQDANFPGDVPFHDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLGGGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQLVEVLTEVEKYNRLIKLLKEVMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPVMTATDVAARGLGYKAIGKDDALLLLPVHCLVLLLVTIIFLVVMLHGYLEHSFINMPEMLPYHF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0258 604 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 395 403 IPR000629 -
Lele23g0258 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 451 IPR027417 -
Lele23g0258 604 FunFam probable ATP-dependent RNA helicase DDX17 201 452 - -
Lele23g0258 604 Gene3D - 202 449 IPR027417 -
Lele23g0258 604 MobiDBLite consensus disorder prediction 85 185 - -
Lele23g0258 604 SMART ultradead3 264 465 IPR014001 -
Lele23g0258 604 Pfam DEAD/DEAH box helicase 269 438 IPR011545 GO:0003676|GO:0005524
Lele23g0258 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 449 IPR014001 -
Lele23g0258 604 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 218 555 - -
Lele23g0258 604 MobiDBLite consensus disorder prediction 1 51 - -
Lele23g0258 604 MobiDBLite consensus disorder prediction 1 19 - -
Lele23g0258 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 552 IPR001650 -
Lele23g0258 604 MobiDBLite consensus disorder prediction 101 116 - -
Lele23g0258 604 Gene3D - 450 559 IPR027417 -
Lele23g0258 604 CDD SF2_C_DEAD 462 552 - -
Lele23g0258 604 CDD DEADc_DDX5_DDX17 257 449 - -
Lele23g0258 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 245 273 IPR014014 GO:0003724
Lele23g0258 604 Pfam Helicase conserved C-terminal domain 473 553 IPR001650 -
Lele23g0258 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 558 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0258 Lele-ChrLele23 1780124 1783180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0258 236 558 Eukaryotic Initiation Factors Gene Family AT3G19760 33.437 3.23e-51 180