Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0255 ATGCATCACCACCGAATCCTCTTCGATAAATACCATCCTGGTTATTTCGGTAAGGTCGGTATGCGATACTTTCACAAGCTTCGCAACCAATTCTACTGCCCCATTGTCAACATTGACAAACTGTCGTCCTTAGTTCCTCAAGAAGCGAAGGATAAGGCTTCCAAGAATAACGCTCCCTTGATCGATGTCACTCAGTTTGGATACTTCAAGGTGTTGGGCAAAGGGGTTTTACCTGAGAATAAGCCCTTCGTCGTAAAGGCCAAACTCGTGTCCAAGATTGCTGAGAAGAAGATCAAGGAAGCGGGAGGTGCTGTTGTCCTCACTGCTTAG 330 0.4636 MHHHRILFDKYHPGYFGKVGMRYFHKLRNQFYCPIVNIDKLSSLVPQEAKDKASKNNAPLIDVTQFGYFKVLGKGVLPENKPFVVKAKLVSKIAEKKIKEAGGAVVLTA 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0255 109 ProSitePatterns Ribosomal protein L15 signature. 70 102 IPR001196 GO:0003735|GO:0005840|GO:0006412
Lele23g0255 109 Gene3D - 21 109 - -
Lele23g0255 109 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 7 106 IPR021131 -
Lele23g0255 109 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 109 - -
Lele23g0255 109 FunFam 60S ribosomal protein L27a 21 109 - -
Lele23g0255 109 SUPERFAMILY Ribosomal proteins L15p and L18e 2 108 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0255 Lele-ChrLele23 1777958 1778287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0255 1 109 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 85.321 1.68e-66 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0255 23 1777958 1778287 Lele17g1079 17 21274428 21276068 CCT
Lele23g0255 23 1777958 1778287 Lele18g0462 18 2678778 2679444 CCT
Lele23g0255 23 1777958 1778287 Lele19g0482 19 2717713 2719348 CCT
Lele23g0255 23 1777958 1778287 Lele20g0974 20 15814252 15814916 CCT
Lele23g0255 23 1777958 1778287 Lele24g1693 24 22284997 22285437 ECH
Lele23g0255 23 1777958 1778287 Lele23g0255 23 1777958 1778287 ECH
Lele21g1752 21 25275530 25276832 Lele23g0255 23 1777958 1778287 hybridization
Lele22g1727 22 22624742 22625182 Lele23g0255 23 1777958 1778287 hybridization