LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g0255	ATGCATCACCACCGAATCCTCTTCGATAAATACCATCCTGGTTATTTCGGTAAGGTCGGTATGCGATACTTTCACAAGCTTCGCAACCAATTCTACTGCCCCATTGTCAACATTGACAAACTGTCGTCCTTAGTTCCTCAAGAAGCGAAGGATAAGGCTTCCAAGAATAACGCTCCCTTGATCGATGTCACTCAGTTTGGATACTTCAAGGTGTTGGGCAAAGGGGTTTTACCTGAGAATAAGCCCTTCGTCGTAAAGGCCAAACTCGTGTCCAAGATTGCTGAGAAGAAGATCAAGGAAGCGGGAGGTGCTGTTGTCCTCACTGCTTAG	330	0.4636	MHHHRILFDKYHPGYFGKVGMRYFHKLRNQFYCPIVNIDKLSSLVPQEAKDKASKNNAPLIDVTQFGYFKVLGKGVLPENKPFVVKAKLVSKIAEKKIKEAGGAVVLTA	109

Showing 1 to 1 of 1 entries

Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g0255	109	ProSitePatterns	Ribosomal protein L15 signature.	70	102	IPR001196	GO:0003735\|GO:0005840\|GO:0006412
	Lele23g0255	109	Gene3D	-	21	109	-	-
	Lele23g0255	109	Pfam	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	7	106	IPR021131	-
	Lele23g0255	109	PANTHER	60S RIBOSOMAL PROTEIN L27A	1	109	-	-
	Lele23g0255	109	FunFam	60S ribosomal protein L27a	21	109	-	-
	Lele23g0255	109	SUPERFAMILY	Ribosomal proteins L15p and L18e	2	108	IPR036227	-

Showing 1 to 6 of 6 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g0255	Lele-ChrLele23	1777958	1778287	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g0255	1	109	Cytoplasmic Ribosomal Protein Gene Family	AT1G23290	85.321	1.68e-66	195

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele23g0255	23	1777958	1778287	Lele17g1079	17	21274428	21276068	CCT
	Lele23g0255	23	1777958	1778287	Lele18g0462	18	2678778	2679444	CCT
	Lele23g0255	23	1777958	1778287	Lele19g0482	19	2717713	2719348	CCT
	Lele23g0255	23	1777958	1778287	Lele20g0974	20	15814252	15814916	CCT
	Lele23g0255	23	1777958	1778287	Lele24g1693	24	22284997	22285437	ECH
	Lele23g0255	23	1777958	1778287	Lele23g0255	23	1777958	1778287	ECH
	Lele21g1752	21	25275530	25276832	Lele23g0255	23	1777958	1778287	hybridization
	Lele22g1727	22	22624742	22625182	Lele23g0255	23	1777958	1778287	hybridization

Showing 1 to 8 of 8 entries