Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0232 ATGGAGAATCCGTTTGACTTCCACTTTACCGTCGGTTACTCTGAGCAGTCACCAATGGCTCCATCATTGCAACCAACCGGTTTCCCTGAGGAATTCACGTCACAGTCTCACCACGTAGTTCCTCTAAGCTGGACATCATCAATCGGACCGGAGCAATTAGCCCGCTCCAGTTGTTCTTCATCGGCGCCACCAGATGCTCCGTCGCCATTGATGGTGGAGGTTCAGAGAGTGGAAGCCGGACTGGAGGAGTATGGGGAGGATTCTAAAAAACTTCGCGCTAAAATCTTCTGCCATCCTTTGTATCCTAAACTTATGGATGCCTATATCGATTGCCAAAAGGTTGGAGCACCGCCGGAGATAGCAAAACTGTTCGACGAAATCGGACGAGAGAATGGCGATCTATGTCAGAGATCTACTTACTTGGGTGCCGATCCCGAGCTCGATGAATTCATGGAAACGTATTGCGATTTACTGGTGAAGTACAAATCGGATCTCTCGAAGCCTTTTGATGAAGCAACCGCGTTTCTCAACGACATTGAAATACAGCTTAACTCCCTCTGCAACGACCCTTACAGAAACTATAATTCTGATGAAGGTACTGGATCATCCGAGGATGGCATAAGTAAGGAAGAGAGAGAAGAAAACGAGTCCAAGATAATCACTGAGGATCGAGAGTTGAAGGACAAACTTCTTCGTAGATATAGCGGATATATTATTGGTCTAAAGCATGAATTTTCCAAAAAGAAGAAGAAGGAGAAGCTACCCAAAGAAGCGAGACAAATATTGCTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACAGGTCTGGATCAAAAGCAGATAAACAATTGGTTCATAAACCAAAGGAAGCGCCATTGGAAGCCAACAGAGGAAATGCAAGCAGCAGTTTTGGATGGCCTCTATGGACCCTTTTACACCAGAACCAGTTGTGGCCCTGCATCACCTGAACTTCTTCCTTCCTCCCTTCTTCCACTTTGCAAAAGCCTTCAAAACACCGAAAATTTTCTCTTAATTCTCCAGGAAATTAATTCAGCAACTAATCCCAATAAAGAGACGGATGTTGCAATGAAGAACAATAACGGCATCGACTTTGAATGTTCCAACTTTGATTCAATGGTGGCGAAGATGGTTATGGTTTGA 1200 0.4483 MENPFDFHFTVGYSEQSPMAPSLQPTGFPEEFTSQSHHVVPLSWTSSIGPEQLARSSCSSSAPPDAPSPLMVEVQRVEAGLEEYGEDSKKLRAKIFCHPLYPKLMDAYIDCQKVGAPPEIAKLFDEIGRENGDLCQRSTYLGADPELDEFMETYCDLLVKYKSDLSKPFDEATAFLNDIEIQLNSLCNDPYRNYNSDEGTGSSEDGISKEEREENESKIITEDRELKDKLLRRYSGYIIGLKHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVLDGLYGPFYTRTSCGPASPELLPSSLLPLCKSLQNTENFLLILQEINSATNPNKETDVAMKNNNGIDFECSNFDSMVAKMVMV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0232 399 MobiDBLite consensus disorder prediction 203 218 - -
Lele23g0232 399 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 111 314 - -
Lele23g0232 399 Pfam KNOX2 domain 142 187 IPR005541 GO:0003677|GO:0005634
Lele23g0232 399 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677
Lele23g0232 399 CDD homeodomain 259 308 IPR001356 GO:0003677
Lele23g0232 399 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677
Lele23g0232 399 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981|GO:0006355
Lele23g0232 399 Pfam ELK domain 225 246 IPR005539 GO:0003677
Lele23g0232 399 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
Lele23g0232 399 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677|GO:0006355
Lele23g0232 399 SUPERFAMILY Homeodomain-like 246 320 IPR009057 -
Lele23g0232 399 SMART ELK_2 225 246 IPR005539 GO:0003677
Lele23g0232 399 MobiDBLite consensus disorder prediction 194 218 - -
Lele23g0232 399 SMART KNOX2_2 137 188 IPR005541 GO:0003677|GO:0005634
Lele23g0232 399 Pfam KNOX1 domain 91 131 IPR005540 GO:0003677|GO:0005634
Lele23g0232 399 SMART HOX_1 247 312 IPR001356 GO:0003677
Lele23g0232 399 Gene3D - 243 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0232 Lele-ChrLele23 1591393 1600021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0232 1 326 Homeobox Transcription Factor Family AT1G23380 50.146 4.05e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele23g0232 KNOX2 5.5e-24 No_clan