Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0226 ATGCAGAGCACAGCTATCACTCTCTCCCCTTCGCTTACTCTTCACAAACCTCGCAGACCTTTTACCTCCAATCGCTTCCATTCTACACATTTCTCTCTCTCTGCTTCCTCTGCCAAGCCCTGTGAAAGCTCCTCCTCGTTCTATCGCCGATATTGGTCCGTTGCTTCTTCCTCCTCCTCCTCCTCCTCTTTTAAGTTCAGGCCCTCGACATCTTCGCTCACTCCTGCTTCCTCTGATTCTGATGCCACTCGCTTTGAGGCTCTGGCCACTTCTGTGCCTGAGAGCGCGGATGAGAGTTCCAACGCCTTATTCAAAACTCTGCAGCTTGGATCCTTGTTTGGCCTCTGGCCTAAAATGAGTGGTTCCCTGGTATATGGCTTTCTTGCAGCTATACTGCCTTTGGCTATGGTACATACTTTAGGGAACCTTTTCACTAACATGAGTCTTGGAAAGGTAGCCGTGTCGTTCACTCATACTATCAAAGCAATGGAACCTTTCTTTTCAGTGGTCCTTTCTGCCATATTCCTTGGAGAGATGCCAACTGCGTTGGTGGTCACTTCACTTTTGCCTATTGTTGGTGGAGTGGCACTGGCATCTATTACTGAGGCCTCGTTTAATTGGGCTGGATTTGGGAGTGCAATGGCATCTAATTTGACATTTCAGTCTCGTAATGTTCTCAGCAAGAAGGTCATGGTTAATAAAGAGGAAACAATGGACAATGTAAACCTCTTCTCAATAATAACTGTCATGTCCTTCTTTTTGTTAGCACCAGTGGCTATCTTCATGGAAGGCGTCAAATTTACCCCTGCATACCTGCAATCTGCTGGGTTGAATGTTAAACAATTATACACCAGATCTCTTATTGCTGCACTCTGTTTCCATGCATATCAACAAGTTTCTTATATGATATTGCAGAGGGTATCACCTGTTACCCACTCCGTGGGCAACTGCGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCCTCTTCTTCAAAACACCCGTATCACCTGTTAACGCTTTAGGCACTGATCAGAGAAAACTATATCTCCCAGCAGCCCATGCTTCAGTTGCAAGAAATGAATGCAAAATCCAACGTAAAAGATCTCGAGCCTCCTTCATCATCACAGGGCGATTTCTTGCAAGATTTACTCCATATAGATCCATTTCAAGTATATGGGTCTTCATCAAATCAGTTACTGGGGTCCAAACTGCAAATTTTGTTAACCCTTTTGATAGTTTCTCATTTGGCTGTTCATCACCAGATTTTGATGTTTTTGAGGCAAAACCAATTACTGAAAATATTAATAATGGCAATAAAGGGCATGCACATGTTGTTATGGAGAATAATTTCCAGTTCGGAGGTAATAATAATTATAGCCTCAACGTTTCTCACGAAAGGAATCAAATGGAAATGGTGGATTATGCAGACCTGAGCAATTATTATTTGCCGTTTGACTCTCAAGAAACCAAGCCTATGAATTTTGAAGTACCAGATGATGAAGTCTCAATAATATCTGCAGATCACAGTTTTCTCAGAAGGGTTGGTTTGAACAATAAGAATGGCAGGCTGCTAGTTCAACTGGTTGAACAATACGGATTGAGAGAGTGGTCTCATATTGCTCTGAGTTTGCCTGGGAGAATAAGCAAACAATGTCGAGAGCGTTGGCACAATCATTTAAGGCCTACCATCAAGAAGGACACATGGAGTAATGAAGAGGATAAGATGCTGATCGAAGCACACGGAGAGATAGGAAATAAATGGGCTGAGATTGCTAAGAAGTTACCTGGAAGAACTGAAAACTCCATTAAAAACCATTGGAATGCAACCAAGAGAAGACAATATTCAAAAAGAAAGTGTCGCTCAAAGTTCCCTAAACCCTCTCTTCTTCAGGATTACATCAAGAGCTTGAACTCATACAAAAACCCTCCCATAGATTATAGCAGAAGCAGAAGATCCTCTTCTTCTGCTAATAACCCTAACAACAGCAATACAAGGAAATTAGCATCATTAGCAACACCGGCAAGTGCGCAGTTTTGTCCCGACAATGACAGATTGGTTCCTACATATGACGAGGTCCCAGACTTCTGTTTCGATGATGAAAACACAACTTTGTTTCAAGAGGGGTACAATCTTGATTCTTTCCTTGATGATATGCCTTGTGCTTCTGATCATACTGTGCATGGAGGGGACGATTTTGAAGCAAAGTTTCAATATTGTGGCGATGATGTCGTTGTTCATAATAATAATATTGATCTTGATGATGGGGATGATGATTATGATGATCAGTTTGATTCACAGAATGTGGAGGTGGAAGTTAAGGACGAGATGGATTTGATGGAGATGATGTCTCAGATCAGAGATGTTCTTTGA 2373 0.4231 MQSTAITLSPSLTLHKPRRPFTSNRFHSTHFSLSASSAKPCESSSSFYRRYWSVASSSSSSSSFKFRPSTSSLTPASSDSDATRFEALATSVPESADESSNALFKTLQLGSLFGLWPKMSGSLVYGFLAAILPLAMVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAIFLGEMPTALVVTSLLPIVGGVALASITEASFNWAGFGSAMASNLTFQSRNVLSKKVMVNKEETMDNVNLFSIITVMSFFLLAPVAIFMEGVKFTPAYLQSAGLNVKQLYTRSLIAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVLFFKTPVSPVNALGTDQRKLYLPAAHASVARNECKIQRKRSRASFIITGRFLARFTPYRSISSIWVFIKSVTGVQTANFVNPFDSFSFGCSSPDFDVFEAKPITENINNGNKGHAHVVMENNFQFGGNNNYSLNVSHERNQMEMVDYADLSNYYLPFDSQETKPMNFEVPDDEVSIISADHSFLRRVGLNNKNGRLLVQLVEQYGLREWSHIALSLPGRISKQCRERWHNHLRPTIKKDTWSNEEDKMLIEAHGEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKFPKPSLLQDYIKSLNSYKNPPIDYSRSRRSSSSANNPNNSNTRKLASLATPASAQFCPDNDRLVPTYDEVPDFCFDDENTTLFQEGYNLDSFLDDMPCASDHTVHGGDDFEAKFQYCGDDVVVHNNNIDLDDGDDDYDDQFDSQNVEVEVKDEMDLMEMMSQIRDVL 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0226 790 SMART sant 513 562 IPR001005 -
Lele23g0226 790 SMART sant 565 613 IPR001005 -
Lele23g0226 790 CDD SANT 568 611 IPR001005 -
Lele23g0226 790 ProSiteProfiles Myb-like domain profile. 509 560 IPR001005 -
Lele23g0226 790 MobiDBLite consensus disorder prediction 59 79 - -
Lele23g0226 790 Gene3D - 567 632 - -
Lele23g0226 790 Pfam Myb-like DNA-binding domain 567 608 IPR001005 -
Lele23g0226 790 Pfam Myb-like DNA-binding domain 524 560 IPR001005 -
Lele23g0226 790 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 561 615 IPR017930 -
Lele23g0226 790 FunFam Transcriptional activator Myb isoform A 517 566 - -
Lele23g0226 790 PANTHER SOLUTE CARRIER FAMILY 35 121 343 - -
Lele23g0226 790 MobiDBLite consensus disorder prediction 641 667 - -
Lele23g0226 790 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 523 560 IPR017930 -
Lele23g0226 790 CDD SANT 523 560 IPR001005 -
Lele23g0226 790 ProSiteProfiles Myb-like domain profile. 561 611 IPR001005 -
Lele23g0226 790 Gene3D - 520 565 - -
Lele23g0226 790 FunFam Transcription factor MYB119 567 631 - -
Lele23g0226 790 MobiDBLite consensus disorder prediction 602 622 - -
Lele23g0226 790 SUPERFAMILY Multidrug resistance efflux transporter EmrE 117 200 - -
Lele23g0226 790 Pfam Triose-phosphate Transporter family 123 343 IPR004853 -
Lele23g0226 790 SUPERFAMILY Homeodomain-like 540 619 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0226 Lele-ChrLele23 1550192 1557436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0226 1 344 Antiporters AT5G33320 58.942 1.02e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele23g0226 TPT 2.8e-92 CL0184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1060 17 21145261 21148227 Lele23g0226 23 1550192 1557436 CCT
Lele18g0479 18 2816016 2818970 Lele23g0226 23 1550192 1557436 CCT
Lele19g0499 19 2857250 2860216 Lele23g0226 23 1550192 1557436 CCT
Lele20g0957 20 15676852 15679818 Lele23g0226 23 1550192 1557436 CCT
Lele23g0226 23 1550192 1557436 Lele23g0226 23 1550192 1557436 ECH
Lele21g1781 21 25490478 25493579 Lele23g0226 23 1550192 1557436 hybridization
Lele22g1757 22 22830211 22833329 Lele23g0226 23 1550192 1557436 hybridization