Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0212 ATGAAGAAAACAAGTAGTGATTCATCCTCAAAAGTGGATCGCAAGACCATAGAAAGGAATCGCAGAATTCACATGAAAGCTCTTTGCTTCAAGCTCGCTTCTCTTATTCCTTCACACTACTTAAAACACACCAAGGACATGATATCGCAGCAGGACCAGCTGGATATAGCAGCGAGCTACATAAAGAATCTGACGGAGAAACTGGAGAAGCTGAAGGGGAAGAAGGAGGAAGCCATGAAATTAAAGGAAACAACAAGCAGTAATGACAAGGTGATTATGGAGAACATGTTCATGGTTTCGAATCTGCCACTTCTTGAGCTCAGAGACTTGGGTTCCAGCATAGAAGTGATGCTCATCAGTGGATTGAACAGAAACTTCATGTTGTATGAAGTAATTAGCGTCCTCGAAGAAGAAGGAGCAGAAGTTGTGAGCGCAAGCTTTTCCACCGTTGGGGATAAGATATTCCACACTGTTCATGCCCAGGTGAAAATATCAAGAGTTGGTGTAGAAACTACAAGAGTGTATCAGAGGCTTCAGGATTTGATCGCTCCACTTAAAAGCTGGGATAAATTAAGAAAGTATGGAACACAAATTTTTTGTAGAATTAATATGGGAAACTGGAATATATAA 630 0.4079 MKKTSSDSSSKVDRKTIERNRRIHMKALCFKLASLIPSHYLKHTKDMISQQDQLDIAASYIKNLTEKLEKLKGKKEEAMKLKETTSSNDKVIMENMFMVSNLPLLELRDLGSSIEVMLISGLNRNFMLYEVISVLEEEGAEVVSASFSTVGDKIFHTVHAQVKISRVGVETTRVYQRLQDLIAPLKSWDKLRKYGTQIFCRINMGNWNI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0212 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Lele23g0212 209 Coils Coil 54 88 - -
Lele23g0212 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 180 IPR015660 -
Lele23g0212 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 76 IPR036638 GO:0046983
Lele23g0212 209 SMART finulus 15 70 IPR011598 GO:0046983
Lele23g0212 209 FunFam Transcription factor bHLH162 1 92 - -
Lele23g0212 209 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Lele23g0212 209 Gene3D - 1 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0212 Lele-ChrLele23 1411059 1412346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0212 4 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.106 8.78e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele23g0212 HLH 3.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0517 19 2981591 3006195 Lele23g0212 23 1411059 1412346 CCT
Lele23g0212 23 1411059 1412346 Lele24g1732 24 22590536 22591291 ECH
Lele23g0212 23 1411059 1412346 Lele23g0212 23 1411059 1412346 ECH
Lele21g1796 21 25621275 25622156 Lele23g0212 23 1411059 1412346 hybridization
Lele22g1772 22 22941374 22942132 Lele23g0212 23 1411059 1412346 hybridization