Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0210 ATGACTCGTTACTCCAATCACGACCATCGTCGTCTTCTCTCTTCTCCTGCTGTTTTCCCCTGCCAAGACATCTCTCCCTCCACTCTTCTCTCCTCTCTCATCTCTCTCTCCCTCACTATCTGCGATTTTCAATCCAGCTTCTTCCCCACACAGCGACGCAATGCCAGAGAAGCCATACGCCAGGTTGGTATTATCCTTATATTTCTCCAGGAATGTACAGAAATCCCAGAACAATCCCCTGTTCTATGCTTCTCCGAGCTCCACGTTAGTTTCCAGAAGATTCTGTTCTTGCTCCAAGATTGCACTCGTCATGGCGCCAGATTGTGGATGCTGATGAAATCCCAGTACGTCGCCTCCCAATTTTGGGTTCTGATTCGCGGATTTGCCACTGCTCTTGATGTATTGCCTCTGCATCGGATTGAGGTTTGTCGTGAAGTGAAGGAATTGGTGGAACTAGTAGCCAACCAAGCTCAGAAAGTGAAGTTCAAAGTCGATCGTGATGATGAAGAGAATTCAAAACGAGTTCATTCGATTTTGCGTCAGTTTGAGAAGGGGATTGAACCTGACTTGGGTGATATGAAGCGGGTATTAGATTATCTAGAGATAAAGACTTGGAATGATTGTAACAATGAGGTTGAATACTTACTAGATGAAATGTATTTCCAGTGCTCTGAATGCGACGAGCGTGAGGTTCCTCTTCTGAGTGGTTTGATCGCATTGTTGAGCTACTGCAGGGCAGTGATATTCGAAACTCATGATTCTCCAAACACCACAGATTTCTCAGAAGGAACGTGTAGTACAGAGATGACTAAATTCATAAACCCAGAGGATTTCCGATGCCCGATTTCGCTTGAGCTAATGACGGACCCAGTAACTGTATCAACAGGTCAAACCTACAATCGAACTTCGATACAACAATGGCTGAAATCTGGAAACAAAACCTGCCCCAAAACTGGAGCGAAGCTGAAGAACACAGAGTTAATCCCAAACACAACGCTCCGAAAGCTTATACAACAATTCTGCATCGACAATGGCGTTTCCCTGACCAAATTAAACAATCAAAGTCGCGACATAGCGAAGACCATCGTCCCGGGAAGCCCCGCGGCAGCTCACGCCACGCAATTTCTCTCCTGGTTTCTCGCTAGAAGACTGGTTTTTGGAACAATGGCGCAGAAGAACAGAGCAGCATACGAGATTCGATTGCTTGCAAGATCCAACATTTTCAACCGATCGGGTCTGATCCAAGTGGGAACAGTGTCCCCTCTGCTCCTCCTTTTGTCAACGAGAGACAAATCCACGCAAGAGAACGCCGTTGCCGCTCTGTTGAAGCTCTCAAAGCATAACAAAGGGAAAGAAACTATAATCGAAAACGGAGGCTTAAAGCCAATTGTCATGGTTCTCAAGAAAGGATTAAGCCCAGAATCATGCCAAATCGCAGCCGCTATCATCTTCTATCTCGCGTCTGTAAAACAAAACAGAAAATCGATAGGAGAAAACCCAGAGGTAATTCCTTCTCTAGTTGAACTGATGAAGGAAGGAACAACGTGTGCAAAGAAGCACGCCATGGTGGCAATCTTCGGGCTTCTGTTACATCCAAGTAATCATAAAAGAGTACTTGAAGCCAATGCAGTTCAGGTGCTCGTTGATATTGTAGCTTCGTCGGAGAAGGAAGATGTGATGACAGATTCGTTAGCAGTGCTTTCGGCTTTAGCGGAGAACAGTGAAGGAGCAGAAGCCATGGTGAAAGAATCGGCTCTGCCTCTGATCACGGCGATACTGAAATCAAGAACGAGGAATTCAGGGAAAGAACATTGCGTTTCGATTCTTCTATCACTTTGCGTGAATGGAGGAGAAGCAGTGATAGGGGTAATGGCGAAAGACGCATCGATACTGGCTTCGTTGTATTCACTTCTCACGGATGGGACGAGTCGTGCGGCAAAGAAAGCTCGTTTCCTCATCAGGATTTTACATGAATTTAACGAAAAACCAACTTCTTCGGTTGCAGAACAACAAACCCTTGACGTTATTGATTTGTTAGGTAGAAGTTGA 2049 0.4553 MTRYSNHDHRRLLSSPAVFPCQDISPSTLLSSLISLSLTICDFQSSFFPTQRRNAREAIRQVGIILIFLQECTEIPEQSPVLCFSELHVSFQKILFLLQDCTRHGARLWMLMKSQYVASQFWVLIRGFATALDVLPLHRIEVCREVKELVELVANQAQKVKFKVDRDDEENSKRVHSILRQFEKGIEPDLGDMKRVLDYLEIKTWNDCNNEVEYLLDEMYFQCSECDEREVPLLSGLIALLSYCRAVIFETHDSPNTTDFSEGTCSTEMTKFINPEDFRCPISLELMTDPVTVSTGQTYNRTSIQQWLKSGNKTCPKTGAKLKNTELIPNTTLRKLIQQFCIDNGVSLTKLNNQSRDIAKTIVPGSPAAAHATQFLSWFLARRLVFGTMAQKNRAAYEIRLLARSNIFNRSGLIQVGTVSPLLLLLSTRDKSTQENAVAALLKLSKHNKGKETIIENGGLKPIVMVLKKGLSPESCQIAAAIIFYLASVKQNRKSIGENPEVIPSLVELMKEGTTCAKKHAMVAIFGLLLHPSNHKRVLEANAVQVLVDIVASSEKEDVMTDSLAVLSALAENSEGAEAMVKESALPLITAILKSRTRNSGKEHCVSILLSLCVNGGEAVIGVMAKDASILASLYSLLTDGTSRAAKKARFLIRILHEFNEKPTSSVAEQQTLDVIDLLGRS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0210 682 Pfam U-box domain 275 342 IPR003613 GO:0004842|GO:0016567
Lele23g0210 682 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Lele23g0210 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Lele23g0210 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 585 IPR000225 GO:0005515
Lele23g0210 682 SUPERFAMILY ARM repeat 392 657 IPR016024 -
Lele23g0210 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Lele23g0210 682 CDD RING-Ubox_PUB 278 319 IPR045210 -
Lele23g0210 682 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Lele23g0210 682 SMART arm_5 573 614 IPR000225 GO:0005515
Lele23g0210 682 SMART arm_5 447 488 IPR000225 GO:0005515
Lele23g0210 682 SMART arm_5 405 446 IPR000225 GO:0005515
Lele23g0210 682 SMART arm_5 531 572 IPR000225 GO:0005515
Lele23g0210 682 Gene3D - 384 522 IPR011989 -
Lele23g0210 682 Gene3D - 523 673 IPR011989 -
Lele23g0210 682 FunFam RING-type E3 ubiquitin transferase 354 667 - -
Lele23g0210 682 PANTHER U BOX DOMAIN-CONTAINING 64 656 - -
Lele23g0210 682 FunFam RING-type E3 ubiquitin transferase 274 346 - -
Lele23g0210 682 SUPERFAMILY RING/U-box 274 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0210 Lele-ChrLele23 1390084 1392132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0210 10 665 U-box Gene Family AT1G60190 39.403 3.35e-156 465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0210 23 1390084 1392132 Lele17g1028 17 20939484 20943540 CCT
Lele23g0210 23 1390084 1392132 Lele18g0507 18 3011652 3017092 CCT
Lele23g0210 23 1390084 1392132 Lele19g0528 19 3069518 3074390 CCT
Lele23g0210 23 1390084 1392132 Lele20g0926 20 15513938 15517925 CCT
Lele23g0210 23 1390084 1392132 Lele24g1735 24 22603580 22605628 ECH
Lele23g0210 23 1390084 1392132 Lele23g0210 23 1390084 1392132 ECH
Lele21g1798 21 25637754 25639802 Lele23g0210 23 1390084 1392132 hybridization
Lele22g1774 22 22956517 22958565 Lele23g0210 23 1390084 1392132 hybridization