Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0207 ATGACTGGTTCCTCCGCGGGTTCTAATAGTGGCAATAACTTCCTTGAGCGTCGTCTTCAGACACTTGTGTTCAAATCAGGGATGGCCAAGTCAATTCATCATGCTAGGGTCCTCATCAGGCAGAGGCATATCAGGGTTGGGAGGCAGGGGGTGAACATTCCATCATTCATGGTGCGAGTTGATTCCCAGAAGCACATTGACTTTTCACTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGAGTGAAGAGAAGGAACCAAAGGGCTGCTGCCAAGAAGGCTGCTGGCGGAGATGGAGATGAGGAGGATGAGGAGTAA 318 0.5094 MTGSSAGSNSGNNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQGVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQRAAAKKAAGGDGDEEDEE 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0207 105 Gene3D - 16 73 IPR036986 GO:0003723
Lele23g0207 105 ProSiteProfiles S4 RNA-binding domain profile. 17 91 - -
Lele23g0207 105 ProSitePatterns Ribosomal protein S4 signature. 15 39 IPR018079 GO:0019843
Lele23g0207 105 SMART s4_6 17 88 IPR002942 GO:0003723
Lele23g0207 105 MobiDBLite consensus disorder prediction 70 105 - -
Lele23g0207 105 Pfam S4 domain 17 60 IPR002942 GO:0003723
Lele23g0207 105 CDD S4 17 61 - -
Lele23g0207 105 SUPERFAMILY Alpha-L RNA-binding motif 13 68 - -
Lele23g0207 105 FunFam 40S ribosomal protein S9 16 96 - -
Lele23g0207 105 TIGRFAM uS4_arch: ribosomal protein uS4 13 74 IPR005710 GO:0003735|GO:0006412|GO:0015935
Lele23g0207 105 PANTHER 30S 40S RIBOSOMAL PROTEIN 13 91 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0207 Lele-ChrLele23 1367744 1371781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0207 13 95 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.566 5.06e-52 160