Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0205 ATGGTGGCTACATCTTGCACAAATTTGTTGGATTTGGTGTCTGGGGACGTTTTAGATTTCCCTCAAACACCCAGAGCTCTTCCGCGTGTTAATACTGTTCCTGGAGTGATTTCTGATATAGATGGGAAAAAAAGTACTGGTGATGATGATCCACAGGCTTCCTCATCAGAACATCGTCAAAAGATAATCCTTGCAGCAAATTTTCTTCCCCTTAATGCTCATAAGGATAAAGATTCAGGCAGATGGTGCTTTAGTTATGATGAAGATTCGATTTTGTGGCAGCTAAAAGATGCTATTTCTTTTGATACCGATGTTGTTTATGTGGGATCTTTGAAGATTGATGTTGATGAAAGTGAACAAGAGAGAGTTTCTCAAGAGTTGTTAGATGAATTCAAATGCTGGCCTACCTTCCTTCCACCGCTCATTCAGAATAGGTTTTATAATGGATTTTGCAAGCAACATTTGTGGCCACTATTTCACTACATGTTACCGATGTTTCCCGATCATGGCAATCGCTTTGACAGGGTGCTCTGGCAGGCTTATGTTGCTGCTAACAGGATATTTGCAAACAGGGTTTTGGAGGTTATGAATCCAGAAGTTGATTTTGTATGGGTTCATGATTATCATCTCATGGTTCTCCCAACATTTCTCCGGAAAGGATACAGTAAAGTGAAGCTAGGATTTTTCCTCCACAGCCCCTTTCCTTCATCAGAAATTTATCGGACTCTGCCTGTCAGAGACGAAATTTTGAAAGCACTTCTCAATGCAGATTTAATTGGCTTTCATACATTTGATTATGCTCGTCATTTTTTATCTTGTTGTAGTCGAATGCTTGGCTTGGAATATGAATCCAAAAGGGGCTACATTGGGCTTGAATACTATGGCCGCACAGTATACATTAAAATCTTGCCAGTAGGGATTCACATGGCTAGGCTTCAATCTGCTATAAATCACCCATCTTCTACTGACAAAGTTCAAGAACTTTATGAGCAATTTATGGGGAAGCAACTTATTCTTGGTGTTGATGATATGGATATCTTTAAAGGAGTCAGTTTGAAGCTCTTGGCTGTAGAATTACTCCTAGATCAGAATCCAGAACTGCTTGGTGAATTAGTACTAGTCCAAATTGTAAATCCCCCGAAAAGTTCAGGCAAAGATGTTGAGGAAGCGAAGAAGGAGATACACCATATTGCTGACAGGATAAATGAAAGGTTCAGTTGGCTAAATTATGAACCTGTGATCATCATAGATCATCCTGTTCCTTTTTATGAGAAGATAGCCTATTATTCCTTGGCAGAATGTTGCATTGTGAATGCTGTGCGCGATGGTATGAATTTAATTCCATACGAGTATATCATCTGTAGGCAGGGGAATACGCAAATGGATCAAGCCTTGGGAATTGTTTCAGAGCTCCCTCGTACAAGTTCACTTGTTGTTTCTGAGTTTATTGGCTGCTCGCCATCTCTTAGTGGGGCATTGAGGGTGAACCCATGGGACATTAGTGCTGTAGCTGATGCAATAAATTTGGCCATCAGTATGTCTATCGTGGAGAAACAGTTACGGCATGAGAATCACTATCGGTATGTTAGCTCTCATGACATGGGTTACTGGGCTCGAAGTTTTCTACAAGATCTAGTTCGTTCGTGCCAGGATCACCTCAGCAAACGTTGTTGGGGCATTGGCTTTGGACTGAGTTTCAGAATCCTGGCCCTTTCTCCCAGTTTTAGGAAGCTGTCAATTGGCCAAATTGTCTCCGCATATAAAAGGTCAAATCAGAGAGCAATTTTTCTGGACTATGATGGTACCCTTGTGCCCCAAACTTCCATTGTTAAAAGTCCCAGTCCTGAAGTCATATCTTTGCTGAACAACCTATGCAGTGACCCCAACAACATTGTGTTTATAGTCAGTGGCAGGGGAAGGCCTTCATTAGGTGAGTGGTTAAATCAGTGCGAGAACCTCGGTATTGCAGCTGAGCACGGTTATTTTATCAGGTGGGATGTACAGTCAAGTTGGGAAACAAATTATATAGCTACAGATTTTGCTTGGAAAAGCATTGTTGAACCTGTAATGAGAGCATATACTGAGTCAACTGATGGCTCTCAAATGGAGATCAAGGAGAGCGCCTTGGTTTGGCACCACCGTGACGCTGATCTTGATTTTGGGTCTTGGCAGGCCAAGTCGCTGCTGGATCACCTTGAAAATGTCCTTTCAAATGACCCAGTGGTTGTTAAGAAGGGACAGTACATTGTTGAAGTTAAACCACAGGGAATCACGAAAGGGTTAGTTGTAGAAGAGGTTCTGTCTAGACTGACCCGGACTGGGAAATCACCAGATTTCATTCTGTGCATTGGGGATGATAGGTCCGACGAGGACATGTTCGCAAGCATATCCACCAAAGTGTACGGCGGGAGCTCATCTTTAGCACCAGAAATCTTTGCTTGCACAGTTGGCCAGAAACCAAGCAAAGCCAGGTACTACGTAGACGATACTGCTGAGGTGATGATGTTGCTTAAAAGCCTTGCTACTGCTTCAAGGCTTAAACCAGTATGTGATGATGAAGAAGAAGGTCCTTCTGAAAGAGTGGAAGCTGGTTCTGTAACGTTCACCAAATTTTATGTTATCATCAGCTATACCTTCAAGAGCATTGGCCTTCTTCGTCGTGCCATGACTCATGCTTCCTTCTCAGAAGAGAACAACAGAGCTCTGAGCATTCTGGGTGCCAATTTCATCGAAACATCTGTCTCTTTCCATTCACTTTCAAAAGACATTGACATCTCTCCGAAAGATCTGAATCGTAGAATAGCGGAATTCTTCAACGTGGAGTCTTCATGCACTGGAGACGCATTGCTGTTGGGTTTGCAAAAGGTGGTTCGGGTTTCACCCAAGACCAATTCTTCTGCACCTTCTGTGGTTTGTGGTGCATTCCGTGCAATCTTTGGTGCTATTGCTATTGATACCGCAAACTGCGATGCCGCAGGCAACGTTTTCTGGGCCGTTCACTGA 3003 0.4286 MVATSCTNLLDLVSGDVLDFPQTPRALPRVNTVPGVISDIDGKKSTGDDDPQASSSEHRQKIILAANFLPLNAHKDKDSGRWCFSYDEDSILWQLKDAISFDTDVVYVGSLKIDVDESEQERVSQELLDEFKCWPTFLPPLIQNRFYNGFCKQHLWPLFHYMLPMFPDHGNRFDRVLWQAYVAANRIFANRVLEVMNPEVDFVWVHDYHLMVLPTFLRKGYSKVKLGFFLHSPFPSSEIYRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYYGRTVYIKILPVGIHMARLQSAINHPSSTDKVQELYEQFMGKQLILGVDDMDIFKGVSLKLLAVELLLDQNPELLGELVLVQIVNPPKSSGKDVEEAKKEIHHIADRINERFSWLNYEPVIIIDHPVPFYEKIAYYSLAECCIVNAVRDGMNLIPYEYIICRQGNTQMDQALGIVSELPRTSSLVVSEFIGCSPSLSGALRVNPWDISAVADAINLAISMSIVEKQLRHENHYRYVSSHDMGYWARSFLQDLVRSCQDHLSKRCWGIGFGLSFRILALSPSFRKLSIGQIVSAYKRSNQRAIFLDYDGTLVPQTSIVKSPSPEVISLLNNLCSDPNNIVFIVSGRGRPSLGEWLNQCENLGIAAEHGYFIRWDVQSSWETNYIATDFAWKSIVEPVMRAYTESTDGSQMEIKESALVWHHRDADLDFGSWQAKSLLDHLENVLSNDPVVVKKGQYIVEVKPQGITKGLVVEEVLSRLTRTGKSPDFILCIGDDRSDEDMFASISTKVYGGSSSLAPEIFACTVGQKPSKARYYVDDTAEVMMLLKSLATASRLKPVCDDEEEGPSERVEAGSVTFTKFYVIISYTFKSIGLLRRAMTHASFSEENNRALSILGANFIETSVSFHSLSKDIDISPKDLNRRIAEFFNVESSCTGDALLLGLQKVVRVSPKTNSSAPSVVCGAFRAIFGAIAIDTANCDAAGNVFWAVH 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0205 1000 Pfam Glycosyltransferase family 20 62 545 IPR001830 GO:0003824|GO:0005992
Lele23g0205 1000 CDD HAD_TPP 594 835 - -
Lele23g0205 1000 TIGRFAM T6PP: trehalose-phosphatase 591 841 IPR003337 GO:0003824|GO:0005992
Lele23g0205 1000 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 592 709 - -
Lele23g0205 1000 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 313 - -
Lele23g0205 1000 Pfam Ribonuclease-III-like 884 987 IPR000999 GO:0004525|GO:0006396
Lele23g0205 1000 MobiDBLite consensus disorder prediction 37 56 - -
Lele23g0205 1000 Gene3D Glycogen Phosphorylase B; 53 314 - -
Lele23g0205 1000 Pfam Trehalose-phosphatase 596 830 IPR003337 GO:0003824|GO:0005992
Lele23g0205 1000 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 842 IPR001830 GO:0003824|GO:0005992
Lele23g0205 1000 MobiDBLite consensus disorder prediction 42 56 - -
Lele23g0205 1000 SUPERFAMILY HAD-like 593 841 IPR036412 -
Lele23g0205 1000 Gene3D Ribonuclease III domain 868 999 IPR036389 GO:0004525|GO:0006396
Lele23g0205 1000 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 548 - -
Lele23g0205 1000 Gene3D Glycogen Phosphorylase B; 315 530 - -
Lele23g0205 1000 SUPERFAMILY RNase III domain-like 868 997 IPR036389 GO:0004525|GO:0006396
Lele23g0205 1000 SMART riboneu5 883 1000 IPR000999 GO:0004525|GO:0006396
Lele23g0205 1000 FunFam Alpha,alpha-trehalose-phosphate synthase 315 530 - -
Lele23g0205 1000 CDD GT20_TPS 61 545 IPR001830 GO:0003824|GO:0005992
Lele23g0205 1000 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 722 853 - -
Lele23g0205 1000 Gene3D - 722 850 IPR023214 -
Lele23g0205 1000 Gene3D - 592 711 IPR023214 -
Lele23g0205 1000 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 594 796 IPR006379 -
Lele23g0205 1000 ProSiteProfiles Ribonuclease III family domain profile. 868 987 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0205 Lele-ChrLele23 1355113 1359851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0205 1 844 Trehalose Biosynthesis Gene Families AT1G23870 66.825 0.0 1224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0205 23 1355113 1359851 Lele23g0205 23 1355113 1359851 ECH
Lele21g1802 21 25662794 25669459 Lele23g0205 23 1355113 1359851 hybridization
Lele22g1779 22 22991596 22992400 Lele23g0205 23 1355113 1359851 hybridization