Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0203 ATGCTCAGCGTTCCGCATAAGACTCAGCAAATAGGTGATAGCTTGAGGTACTCATACCCTGAATCGCCTTTCTCTTCATTCCAAGATCCTTATTACATTGCTATAAATGAGAAAGAAGAACCATCTCCTTCATCAACAGTAAGCAAAATCAGCCCACTTATTCTATTAGTGATAATTGTTCTAACAGTCATCTTCTTCATCTATGGAATCGTTCATTTGGTTCTTTGGCTTCTAATGAAAACTCCATCATCCTCTTCACCTCTATCTCATTCCAATAGATTTCCAGAATCCACGCACTCTCGTGATTTTCAAAGGCAGCTTCATCATCTCTTTCGCTTACATGATTCAGGATTAGAACAGTCTCTCATAGATGCTCTTCCTGTTTTTTACTACGAGGATGTCTTAGGTTTGAAAGAACCCTTTGATTGTGCTGTGTGCCTCTGTGAATTCTCGGAGCATGACAAGCTGAGATTGTTGCCAATGTGTGGCCATGCTTTTCACATTACTTGTCTAGACACGTGGCTTCTCTCAAACTGTACATGCCCTCTCTGCAGAGCGACAGTCTCATCAAGTTCCAATTTTTCCTTGGAAAATCCATTATTCAACAATGATAATTCATGGGTTTTGAACAGATTCAAAGGAGATGAAGAGAATGTCAATGTGTGTTCATCAGATACTGAGAGAATTAACGAAAAAAGGATTCTTTCTGTGAGGCTTGGGAAGTTCAGAAACATTGACGGAGGAGAATTAGAGGTTGGAGAAGAAGAGGGTAGTAGTTGTAATATGGATGGAAGGAGATGTTTCTCCATGGGTTCGTATCAGTATGTAGTGAGTGGTTCAAATCTGCAAGTGGTTCTTTCTGATGTTTCAGACAATGAGGATGATGCTGTGGAGGGGAAGAAGATAAGAGAAAGAATTAGAGGTGAGAGCTTCTCTGTGTCAAAGATATGGCTTTGGTCCAACAAAAGTAAGTTTCGAAGTTCTTCTGATGATGCTGCTTTACCTTGGTTACTTTCGTTCCGGCTTCTTGAGAAGTCAAATTTTTTTTGTACGCGCCAGAACTGGAAGTCTCGGGGCTTCGGCCGCGTCCAATTCACTACCCTCGACGCCAAATTGAAAGCTCAATCACTTTCTCTTCAAGATCGCCTTGTCTTCAAATCTCACCGCCTCAAAATCTTTGAGAGCTCAGAAGACATCATCTTCAGACCCGCCAATGCAAGAAACCGGGTCGACAATGGGGTTTTGCATGCGGGTTGTATGGTTAAAGAGAACTGTATGAGTGTGTTGGAGTACTGGGAGGGTGTGAGAGGATGGATCATGCCCGAGAGGGAGAGGGCTGAGTTTTGGGTGTGGCAGGGGAAAGAGTGTTACAAACTGGAAATAATGTTTCAGGATATATTGGAGACACATGGATATTGTCTTGGGGAAGGAAAAATGAACGCACTACTTCTGAAGAATAGAGCTTATAGCTTTTATTACTATTGGCTCCGTAATTTGACCATTTCGTATCTTCTTAAGTGGGGTTCAGATTCGAAGTTACCATATGAGATTATTTTTCAACTCAATTCTCTTGTTCATACACAGAAAATAAGTTTTGCTTCTGTAGATGATGATTTTATTGATTCGTTCAGCGCCTTAAATGAAGAAACTTATGCGGTAATTCTTCAGAAGTTGCACAACCTAAAGTCCACACGTTATGAACCCCTAAAATATGTGAAGAGTCAATTACATGAGCTAAGAGCCTTGATTACCCCATCAAAGATTTATTGTCTTGGTCCTGAGCTTGAAATCTCTAATTATGTGGTAAAGCATTTTGCATCATATGCTTCAGACTTCATTAGAGTTACTTTTGTTGAAGAGGATTGGAGTAAGCTTCCAACCGGTGCAGTCTCCACTAGCATTCAAAAGCGAATCTTTTCAAAGTCTTTTCAAACTGAAATATATAAGCGGATATTGACTATTCTTCAAGATGGGATTGTAATTGGGGCTAAGAGATTTGAGTTTCTGGCCTATTCAGATAGTCAACTCAGGTCAAATTCTGTTTGGATGTTTGCTTCTAATGATAATGTGACAGCAGATGATATTAGAGAATGGATGGGAAGGTTCAAAGTGATACCCAGTGTCTCTAAATGTGCAGCAAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTCTTGAAGTTCCAACATGGGATGTGGAGTTAATTCCAGATATTGAAATCACCTCTGATGATGGTACAAGCTATTGTTTCTCTGATGGTATTGGAAAAATTTCGCAATATTTTGCCAAGCAAGTAGCAGAGAAGTGTAAATTGAACCATGTTCCATCAGCTTTCCAAATTCGCTATGGTGGATACAAGGGTGTCATTGCGGTTGATCGATATTCTTTCAGGAAGTTATCATTGCGCAAAAATATGCTTAAGTTTGAATCCAAAAGCACAATGCTTAATGTCACTAAATGGAGTGAATCTATGCCTTGCTTTCTGAATCGAGAGATTATAACCCTTTTGTCCACCTTAGGAGTAGAAGATGAAGTATTTGAGGCTTTGCAACAGGATCATCTCTTAAGGAAAGTGGATGGGAGCACATGTGTAATAGTGGGCAAGGTGGTTGTCACAAAAACTCCTTGTCTACATCCAGGAGACATCAGAGTCCTTCATGCTATCTATGATGTGGAATTAGAGGAGAACGGTTTGAGAGATTGCGTTGTCTTCCCCCAAAAAGGGCCTAGGCCGCATCCAAATGAATGCTCAGGTGGTGACCTTGATGGTGATTTATATTTCATAAGCTGGGATAAAGGCCTCGTCCCATGCAAAACAGTGGCTCCAATGGACTGCTCAAGGAGGCCCCGTGTAATGGATCACGAGGAGCTGCAACAATTTTTTGTTGATTACATGATCAATGATACTTTAGGTGCTATCTCCACAGCTCATCTGGTTCATGCAGACCGTGAACCTGAGAAGGCCATGGGTAGAAAATGTCTGGGGTTGGCAGAGCTTCACTCCATGGCTGTTGACTTTGCAAAGACCGGAATTCCTGCTGAAATGCCAAGGACCTTGAAACCAAGGGAGTTTCCAGATTTCATGGAGAGGGTAGGTAAACCAATGTATAACTCGAAGTGGGCTCTGGGCAAACTATACCGAACCATAGTTGAATTGATCTCACAACAAAGGTCCAACTCTGATTGGTCGTCTGAGAAACTAGCAGAAGCATATGATCATGAACTTGAGGTGGATGGTTTTGAGGACTTTCTTGAGGTTGCAAAATTTCATAGAGATATGTATGCTGAGAAAATGGGATCTTTAATGAACTTCTATGGAGCTGAGACTGAGGATGAGTTTCTGACTGGTAACTTGCGAAGTCGTGCTTCATATTTGCAGCGTGATAACAGGAGATACGGAGATATGAAGGATCGGATTCTGTTATCGGTGAAGAATTTGCAGCATGAAGCCAAACATTGGTTCGAAAGTAGTTGCCAACCACATGAAAAGGTGCAAATGGCCAGTGCTTGGTATCAAGAATTTGCTCCGCGTGTTCCTGGTATGATCATGCATGCAGTACTTAATGAGCGAGAGGATTTTCCTCCTTATGTTGTATATGTTGTGATGAGGATTTTGGAGTGA 3624 0.4136 MLSVPHKTQQIGDSLRYSYPESPFSSFQDPYYIAINEKEEPSPSSTVSKISPLILLVIIVLTVIFFIYGIVHLVLWLLMKTPSSSSPLSHSNRFPESTHSRDFQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVLGLKEPFDCAVCLCEFSEHDKLRLLPMCGHAFHITCLDTWLLSNCTCPLCRATVSSSSNFSLENPLFNNDNSWVLNRFKGDEENVNVCSSDTERINEKRILSVRLGKFRNIDGGELEVGEEEGSSCNMDGRRCFSMGSYQYVVSGSNLQVVLSDVSDNEDDAVEGKKIRERIRGESFSVSKIWLWSNKSKFRSSSDDAALPWLLSFRLLEKSNFFCTRQNWKSRGFGRVQFTTLDAKLKAQSLSLQDRLVFKSHRLKIFESSEDIIFRPANARNRVDNGVLHAGCMVKENCMSVLEYWEGVRGWIMPERERAEFWVWQGKECYKLEIMFQDILETHGYCLGEGKMNALLLKNRAYSFYYYWLRNLTISYLLKWGSDSKLPYEIIFQLNSLVHTQKISFASVDDDFIDSFSALNEETYAVILQKLHNLKSTRYEPLKYVKSQLHELRALITPSKIYCLGPELEISNYVVKHFASYASDFIRVTFVEEDWSKLPTGAVSTSIQKRIFSKSFQTEIYKRILTILQDGIVIGAKRFEFLAYSDSQLRSNSVWMFASNDNVTADDIREWMGRFKVIPSVSKCAARMGQLFSSSMQTLEVPTWDVELIPDIEITSDDGTSYCFSDGIGKISQYFAKQVAEKCKLNHVPSAFQIRYGGYKGVIAVDRYSFRKLSLRKNMLKFESKSTMLNVTKWSESMPCFLNREIITLLSTLGVEDEVFEALQQDHLLRKVDGSTCVIVGKVVVTKTPCLHPGDIRVLHAIYDVELEENGLRDCVVFPQKGPRPHPNECSGGDLDGDLYFISWDKGLVPCKTVAPMDCSRRPRVMDHEELQQFFVDYMINDTLGAISTAHLVHADREPEKAMGRKCLGLAELHSMAVDFAKTGIPAEMPRTLKPREFPDFMERVGKPMYNSKWALGKLYRTIVELISQQRSNSDWSSEKLAEAYDHELEVDGFEDFLEVAKFHRDMYAEKMGSLMNFYGAETEDEFLTGNLRSRASYLQRDNRRYGDMKDRILLSVKNLQHEAKHWFESSCQPHEKVQMASAWYQEFAPRVPGMIMHAVLNEREDFPPYVVYVVMRILE 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0203 1207 Pfam RNA dependent RNA polymerase 583 856 IPR007855 GO:0003968
Lele23g0203 1207 Pfam RNA dependent RNA polymerase 862 1050 IPR007855 GO:0003968
Lele23g0203 1207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 194 IPR013083 -
Lele23g0203 1207 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Lele23g0203 1207 SUPERFAMILY RING/U-box 122 191 - -
Lele23g0203 1207 SMART ring_2 143 184 IPR001841 -
Lele23g0203 1207 FunFam E3 ubiquitin-protein ligase ATL6 106 191 - -
Lele23g0203 1207 CDD RING-H2_PA-TM-RING 142 185 - -
Lele23g0203 1207 Pfam Ring finger domain 142 185 IPR001841 -
Lele23g0203 1207 PANTHER RNA-DEPENDENT RNA POLYMERASE 862 1173 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0203 Lele-ChrLele23 1341251 1349605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0203 38 329 C3H Transcription Factor Family AT2G18650 41.593 1.08e-52 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1804 21 25675431 25683321 Lele23g0203 23 1341251 1349605 hybridization