Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0185 ATGGCCTCTTCTTCTGCTCTCCGAGAGCCTTCCAGACACTACGCCTATAACCGCAAGCAAAAATCTCTCGGCCTCTTGTGCACCAATTTCTTGAGCTTGTATAATCGAGATGGCATTCACTTGATCGGTCTTGACGATGCGGCTGCGCGATTAGGTGTCGAGAGGCGGCGGATCTATGATATAGTTAATGTACTGGAGAGCGTCGGGGTGCTTGCAAGAAAAGCTAAGAATCAATATACTTGGAAAGGATTTGGGGCAATTCCAGGGGCCTTACAGGAGCTCAAGGAAGAAGGTTTAAGGGAGAATTGCGATGCTTTTGATGGCAGTCATTATAGCGCAAAAGTATCAGACGATGAGGATGATGAAGAAACATTGTCCAATCCCAGTACTGGAAGTCAGAATGACAAGTCTTGTCCCAATTCTACTCTTGTCAAATCTATGAAAAATGATAACCGAAGGGAAAAGTCTCTGGCACTTCTCACTCAGAATTTTGTCAAGCTCTTTGTTTGCCATAATATGGAGATGATTTCCCTTGATGAAGCCGCCAGGTTATTGCTTGGAGATGCCCATAATACATCCATAATGAGAACGAAAGTAAGACGTCTATATGATATAGCAAATGTGCTGTCATCCATGAACCTCATTGAGAAGACACATACATCAGACACAAGAAAACCTGCTTTTAGATGGTTGAGCTTGAAGGGGAAGACAGAGAATGAGTCCATTCACAATTCAAATCCCAAGGAATCCAGGAAAAGGATATTTGGTAGTGATATCACAAACATCAGTTTTAAGAGGAATAAAGTGGATTTATTCTCTAATGGGGACCCAAACCAGAATACTAAGATGCTAAATAAAGTGGATAGCGATAGTAGGCTCAGTCAGGCGGATAAAAGCCATCAAAATCAGGACTCAAAGCAGAGTTCAAGGAGCTATCAGTTTGGTCCTTTCGCTCCTGCCTTAGTCCCCAAACCAAGTGCCTCTGAGAATAATAATGCGAAGCGGGTCCATGATTGGGACAGTCTGGCAACTGCCTATCGTCCACAGTATCAAAACCAAGCTTTGAAAGAACTCTTCAGTCATTACATGGAAGCATGGAAATCATGGTACTCAGAAGTCGCAGGCAAGAGATGA 1134 0.433 MASSSALREPSRHYAYNRKQKSLGLLCTNFLSLYNRDGIHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFGAIPGALQELKEEGLRENCDAFDGSHYSAKVSDDEDDEETLSNPSTGSQNDKSCPNSTLVKSMKNDNRREKSLALLTQNFVKLFVCHNMEMISLDEAARLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLSLKGKTENESIHNSNPKESRKRIFGSDITNISFKRNKVDLFSNGDPNQNTKMLNKVDSDSRLSQADKSHQNQDSKQSSRSYQFGPFAPALVPKPSASENNNAKRVHDWDSLATAYRPQYQNQALKELFSHYMEAWKSWYSEVAGKR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0185 377 FunFam E2F transcription factor 8 13 85 - -
Lele23g0185 377 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Lele23g0185 377 Gene3D - 14 86 IPR036388 -
Lele23g0185 377 Gene3D - 147 234 IPR036388 -
Lele23g0185 377 MobiDBLite consensus disorder prediction 300 314 - -
Lele23g0185 377 PANTHER TRANSCRIPTION FACTOR E2F 9 351 IPR015633 GO:0000978|GO:0006357
Lele23g0185 377 MobiDBLite consensus disorder prediction 289 334 - -
Lele23g0185 377 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Lele23g0185 377 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Lele23g0185 377 FunFam E2F transcription factor-like E2FE 147 234 - -
Lele23g0185 377 SUPERFAMILY "Winged helix" DNA-binding domain 154 231 IPR036390 -
Lele23g0185 377 MobiDBLite consensus disorder prediction 126 146 - -
Lele23g0185 377 MobiDBLite consensus disorder prediction 112 149 - -
Lele23g0185 377 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Lele23g0185 377 Pfam E2F/DP family winged-helix DNA-binding domain 154 231 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0185 Lele-ChrLele23 1185560 1189038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0185 13 374 E2F-DP Transcription Factor Family AT3G48160 59.563 2.12e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lele23g0185 E2F_TDP 6.5e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0185 23 1185560 1189038 Lele23g0185 23 1185560 1189038 ECH
Lele21g1824 21 25823130 25826020 Lele23g0185 23 1185560 1189038 hybridization
Lele22g1799 22 23135051 23138160 Lele23g0185 23 1185560 1189038 hybridization